Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | AAFX31_RS14200 | Genome accession | NZ_CP151941 |
| Coordinates | 1299822..1300421 (-) | Length | 199 a.a. |
| NCBI ID | WP_008222290.1 | Uniprot ID | - |
| Organism | Vibrio chagasii strain TBV018 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1294822..1305421
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AAFX31_RS14175 (AAFX31_14185) | aroB | 1295150..1296238 (-) | 1089 | WP_411062190.1 | 3-dehydroquinate synthase | - |
| AAFX31_RS14180 (AAFX31_14190) | aroK | 1296264..1296782 (-) | 519 | WP_004737165.1 | shikimate kinase AroK | - |
| AAFX31_RS14185 (AAFX31_14195) | pilQ | 1296959..1298677 (-) | 1719 | WP_105057647.1 | type IV pilus secretin PilQ | Machinery gene |
| AAFX31_RS14190 (AAFX31_14200) | pilP | 1298713..1299231 (-) | 519 | WP_061033622.1 | pilus assembly protein PilP | Machinery gene |
| AAFX31_RS14195 (AAFX31_14205) | pilO | 1299218..1299829 (-) | 612 | WP_171762284.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| AAFX31_RS14200 (AAFX31_14210) | pilN | 1299822..1300421 (-) | 600 | WP_008222290.1 | PilN domain-containing protein | Machinery gene |
| AAFX31_RS14205 (AAFX31_14215) | pilM | 1300405..1301430 (-) | 1026 | WP_116871578.1 | type IV pilus assembly protein PilM | Machinery gene |
| AAFX31_RS14210 (AAFX31_14220) | - | 1301582..1304143 (+) | 2562 | WP_061033618.1 | penicillin-binding protein 1A | - |
| AAFX31_RS14215 (AAFX31_14225) | oxyR | 1304235..1305128 (-) | 894 | WP_004737158.1 | DNA-binding transcriptional regulator OxyR | - |
Sequence
Protein
Download Length: 199 a.a. Molecular weight: 22848.19 Da Isoelectric Point: 9.6733
>NTDB_id=981412 AAFX31_RS14200 WP_008222290.1 1299822..1300421(-) (pilN) [Vibrio chagasii strain TBV018]
MLHQINLLPWRDEIRAQHRKRFIHLVILGVIVAGAGQWAVGNYFHDQQAKQQARLNYLNQYIADLDRQIQSLKVAEQEHK
AILTRLDVVESLQLGRNKTTDFMNLMPELIPEGVYVDKIKMNGQEIEMAGISDSTARLATMLDNLERSESLKGVEMHSIV
HNRKRFNKEFQTFKVSFVFSPVSLESTTAHRKDKGANHG
MLHQINLLPWRDEIRAQHRKRFIHLVILGVIVAGAGQWAVGNYFHDQQAKQQARLNYLNQYIADLDRQIQSLKVAEQEHK
AILTRLDVVESLQLGRNKTTDFMNLMPELIPEGVYVDKIKMNGQEIEMAGISDSTARLATMLDNLERSESLKGVEMHSIV
HNRKRFNKEFQTFKVSFVFSPVSLESTTAHRKDKGANHG
Nucleotide
Download Length: 600 bp
>NTDB_id=981412 AAFX31_RS14200 WP_008222290.1 1299822..1300421(-) (pilN) [Vibrio chagasii strain TBV018]
ATGTTGCATCAAATTAACCTGCTACCTTGGCGTGATGAGATTCGTGCTCAGCACCGAAAACGTTTTATTCACCTGGTCAT
CCTTGGTGTGATTGTGGCTGGCGCAGGGCAGTGGGCGGTCGGTAATTATTTCCATGATCAACAAGCCAAACAGCAAGCTC
GTCTTAATTATCTCAATCAATACATTGCTGACCTTGACCGTCAGATTCAATCGCTAAAAGTTGCAGAGCAAGAGCATAAA
GCCATTTTGACTCGACTTGATGTGGTGGAATCTTTGCAGCTCGGTCGTAATAAAACCACCGACTTTATGAACTTGATGCC
GGAGTTGATTCCTGAGGGCGTGTATGTCGACAAGATAAAGATGAACGGCCAAGAGATTGAAATGGCCGGCATCAGTGACA
GTACCGCTCGTCTCGCCACCATGCTGGATAACTTAGAACGCTCTGAATCCCTCAAAGGAGTCGAGATGCACTCTATTGTC
CATAACCGTAAGCGCTTCAATAAAGAGTTTCAGACCTTCAAGGTGTCTTTCGTGTTCAGCCCTGTGTCATTAGAAAGCAC
AACTGCACATCGAAAGGATAAGGGGGCTAACCATGGCTAG
ATGTTGCATCAAATTAACCTGCTACCTTGGCGTGATGAGATTCGTGCTCAGCACCGAAAACGTTTTATTCACCTGGTCAT
CCTTGGTGTGATTGTGGCTGGCGCAGGGCAGTGGGCGGTCGGTAATTATTTCCATGATCAACAAGCCAAACAGCAAGCTC
GTCTTAATTATCTCAATCAATACATTGCTGACCTTGACCGTCAGATTCAATCGCTAAAAGTTGCAGAGCAAGAGCATAAA
GCCATTTTGACTCGACTTGATGTGGTGGAATCTTTGCAGCTCGGTCGTAATAAAACCACCGACTTTATGAACTTGATGCC
GGAGTTGATTCCTGAGGGCGTGTATGTCGACAAGATAAAGATGAACGGCCAAGAGATTGAAATGGCCGGCATCAGTGACA
GTACCGCTCGTCTCGCCACCATGCTGGATAACTTAGAACGCTCTGAATCCCTCAAAGGAGTCGAGATGCACTCTATTGTC
CATAACCGTAAGCGCTTCAATAAAGAGTTTCAGACCTTCAAGGTGTCTTTCGTGTTCAGCCCTGTGTCATTAGAAAGCAC
AACTGCACATCGAAAGGATAAGGGGGCTAACCATGGCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Vibrio cholerae strain A1552 |
64.674 |
92.462 |
0.598 |
| pilN | Vibrio campbellii strain DS40M4 |
62.105 |
95.477 |
0.593 |