Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | AAFX34_RS18685 | Genome accession | NZ_CP151937 |
| Coordinates | 2428784..2429086 (-) | Length | 100 a.a. |
| NCBI ID | WP_011078144.1 | Uniprot ID | - |
| Organism | Vibrio vulnificus strain TBV029 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2423784..2434086
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AAFX34_RS18660 (AAFX34_19215) | - | 2424327..2425541 (+) | 1215 | WP_011080966.1 | pyridoxal phosphate-dependent aminotransferase | - |
| AAFX34_RS18665 (AAFX34_19220) | yfbR | 2425622..2426206 (+) | 585 | WP_013572175.1 | 5'-deoxynucleotidase | - |
| AAFX34_RS18670 (AAFX34_19225) | - | 2426212..2427543 (+) | 1332 | WP_011078141.1 | anti-phage deoxyguanosine triphosphatase | - |
| AAFX34_RS18675 (AAFX34_19230) | - | 2427565..2428173 (-) | 609 | WP_013572177.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| AAFX34_RS18680 (AAFX34_19235) | rrtA | 2428153..2428737 (+) | 585 | WP_011078143.1 | rhombosortase | - |
| AAFX34_RS18685 (AAFX34_19240) | comEA | 2428784..2429086 (-) | 303 | WP_011078144.1 | ComEA family DNA-binding protein | Machinery gene |
| AAFX34_RS18690 (AAFX34_19245) | ppiD | 2429219..2431078 (-) | 1860 | WP_013572180.1 | peptidylprolyl isomerase | - |
| AAFX34_RS18695 (AAFX34_19250) | - | 2431255..2431527 (-) | 273 | WP_013572181.1 | HU family DNA-binding protein | - |
| AAFX34_RS18700 (AAFX34_19255) | lon | 2431721..2434072 (-) | 2352 | WP_011078147.1 | endopeptidase La | - |
Sequence
Protein
Download Length: 100 a.a. Molecular weight: 10866.71 Da Isoelectric Point: 9.6573
>NTDB_id=981333 AAFX34_RS18685 WP_011078144.1 2428784..2429086(-) (comEA) [Vibrio vulnificus strain TBV029]
MKQVITLLAMLMAFSFPSVSFADSATKAADKYEGIEISVNINTATAEEIAMMLKGVGIKKAQQIVDFREANGPFKTVDEL
AQVKGIGKSTIEKNQSRIKL
MKQVITLLAMLMAFSFPSVSFADSATKAADKYEGIEISVNINTATAEEIAMMLKGVGIKKAQQIVDFREANGPFKTVDEL
AQVKGIGKSTIEKNQSRIKL
Nucleotide
Download Length: 303 bp
>NTDB_id=981333 AAFX34_RS18685 WP_011078144.1 2428784..2429086(-) (comEA) [Vibrio vulnificus strain TBV029]
ATGAAACAGGTAATTACCCTTTTAGCCATGCTAATGGCATTCTCTTTTCCTTCCGTTTCTTTTGCGGACTCTGCAACGAA
AGCGGCCGATAAATATGAAGGCATTGAGATTTCCGTCAATATCAACACAGCGACAGCAGAAGAAATTGCCATGATGTTAA
AAGGCGTTGGTATTAAAAAAGCTCAGCAAATTGTTGATTTTAGAGAAGCTAATGGACCGTTTAAAACGGTTGATGAGTTA
GCTCAAGTGAAAGGAATCGGTAAATCAACGATTGAGAAAAATCAGTCACGGATTAAGTTGTAA
ATGAAACAGGTAATTACCCTTTTAGCCATGCTAATGGCATTCTCTTTTCCTTCCGTTTCTTTTGCGGACTCTGCAACGAA
AGCGGCCGATAAATATGAAGGCATTGAGATTTCCGTCAATATCAACACAGCGACAGCAGAAGAAATTGCCATGATGTTAA
AAGGCGTTGGTATTAAAAAAGCTCAGCAAATTGTTGATTTTAGAGAAGCTAATGGACCGTTTAAAACGGTTGATGAGTTA
GCTCAAGTGAAAGGAATCGGTAAATCAACGATTGAGAAAAATCAGTCACGGATTAAGTTGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
59 |
100 |
0.59 |
| comEA | Vibrio campbellii strain DS40M4 |
54 |
100 |
0.54 |
| comEA | Vibrio cholerae C6706 |
52.041 |
98 |
0.51 |
| comEA | Vibrio cholerae strain A1552 |
52.041 |
98 |
0.51 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
60 |
60 |
0.36 |