Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AAFX34_RS07880 Genome accession   NZ_CP151937
Coordinates   75798..77321 (-) Length   507 a.a.
NCBI ID   WP_045623569.1    Uniprot ID   -
Organism   Vibrio vulnificus strain TBV029     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 70798..82321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFX34_RS07860 (AAFX34_07850) - 72083..73069 (+) 987 WP_061059015.1 serine/threonine protein kinase -
  AAFX34_RS07865 (AAFX34_07855) - 73102..73707 (+) 606 WP_017789622.1 thiol:disulfide interchange protein DsbA/DsbL -
  AAFX34_RS07870 (AAFX34_07860) - 73761..74642 (-) 882 WP_072614960.1 acyltransferase -
  AAFX34_RS07875 (AAFX34_07865) - 74785..75759 (+) 975 WP_072614961.1 DUF2860 domain-containing protein -
  AAFX34_RS07880 (AAFX34_07870) comM 75798..77321 (-) 1524 WP_045623569.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AAFX34_RS07885 (AAFX34_07875) ilvG 77791..79437 (+) 1647 WP_047112469.1 acetolactate synthase 2 catalytic subunit -
  AAFX34_RS07890 (AAFX34_07880) ilvM 79449..79733 (+) 285 WP_011079065.1 acetolactate synthase 2 small subunit -
  AAFX34_RS07895 (AAFX34_07885) ilvE 79745..80683 (+) 939 WP_061059012.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54695.82 Da        Isoelectric Point: 9.1030

>NTDB_id=981301 AAFX34_RS07880 WP_045623569.1 75798..77321(-) (comM) [Vibrio vulnificus strain TBV029]
MGLAIIHSRASVGVEAPSVSVEVHISNGLPGFTLVGLPETTVKESKDRVRSAIVNSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQISVQFLQQHEFVGELALSGELRAVKGVLPAALAAKGVSRSLVVPHANGDQAALVGKNMHKSACSL
IEVCAHLCGQQALSLHQTKQALQPSSHSRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLRDLLPEMSE
EEAMETAAVASLTQSDINEHNWKQRPFRAPHHSSSMAALVGGGTIPRPGEISLAHNGLLFLDEMPEFERKVLDSMREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARANPQAILRYLGRLSGPLLDRFDMSLEIPALPKGTLAEGGDR
GEPTAVVKARVAQARERMQHRNGKVNALLGSREIEAFCPLSKQDAEFLETALHRLGLSIRAYHRIIKVARTIADLEGAPQ
ITRAHLAEALGYRAMDRLLKQLTLQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=981301 AAFX34_RS07880 WP_045623569.1 75798..77321(-) (comM) [Vibrio vulnificus strain TBV029]
ATGGGGTTGGCGATTATTCATAGCCGCGCCAGTGTGGGCGTCGAAGCGCCTTCAGTGAGCGTGGAAGTGCACATCAGTAA
CGGTTTACCGGGATTTACCTTAGTGGGGTTGCCGGAAACCACCGTGAAGGAGTCAAAAGATCGCGTACGCAGTGCGATCG
TCAACAGCAACTTTCAATTTCCTGCCAAGCGGATCACCGTCAACTTGGCACCTGCCGATCTGCCCAAAGAAGGGGGACGT
TTTGACTTGCCGATCGCACTTGGCATTTTGGCCGCTTCTGAGCAGATCTCCGTTCAGTTTCTCCAACAACATGAATTTGT
CGGTGAATTAGCCTTAAGTGGTGAGCTGCGAGCGGTGAAAGGGGTGCTGCCAGCCGCTCTTGCCGCCAAAGGGGTCTCCC
GCAGTTTGGTGGTACCTCATGCGAATGGGGATCAAGCCGCCTTGGTGGGTAAGAACATGCATAAGTCGGCGTGCTCGCTG
ATTGAAGTTTGTGCCCATTTATGTGGCCAGCAAGCCCTGTCATTACATCAAACCAAGCAAGCATTGCAGCCCTCATCACA
CAGCCGAGATTTACAAGACATCATTGGTCAGCAACAAGGAAAGCGCGCGTTGGAGATTGCCGCTGCGGGCAATCACAATT
TATTGTTTTTAGGGCCTCCAGGGACGGGCAAAACCATGCTGGCGTCACGTTTGCGAGATTTGTTGCCTGAAATGAGTGAG
GAAGAAGCGATGGAAACGGCAGCGGTGGCTTCTTTAACACAAAGCGATATCAATGAGCATAATTGGAAGCAACGGCCGTT
TCGCGCACCGCATCACTCGAGTTCTATGGCGGCGTTGGTGGGCGGTGGAACCATTCCGCGTCCTGGAGAAATCTCACTCG
CACACAACGGCTTACTGTTTTTGGACGAGATGCCGGAATTTGAGCGCAAAGTGCTCGACTCAATGCGTGAACCGCTAGAG
TCGGGGGAAATCATCATTTCACGAGCGCAGGGTAAAACCCGTTTTCCTGCTCGCTTTCAGTTGGTCGGAGCGCTGAATCC
GAGCCCCACGGGCTATTACGAAGGGAACCAAGCTCGCGCCAATCCTCAGGCGATTTTGCGTTATTTAGGCCGTTTATCGG
GTCCACTTTTGGATCGTTTTGATATGTCACTCGAGATCCCCGCATTACCCAAAGGCACATTGGCGGAAGGGGGGGACCGA
GGTGAACCAACGGCGGTGGTGAAGGCGCGAGTGGCGCAGGCGAGAGAGCGAATGCAGCATCGTAATGGCAAGGTGAATGC
CCTATTAGGCAGCCGAGAAATCGAAGCGTTTTGTCCACTAAGTAAGCAGGATGCCGAGTTTCTTGAAACGGCGTTGCACC
GTTTGGGGTTATCGATTCGTGCGTATCACCGCATTATCAAAGTGGCGCGAACCATTGCCGATTTAGAAGGCGCACCTCAG
ATCACGCGTGCGCATTTGGCCGAAGCACTCGGTTATCGGGCGATGGATCGCTTGCTCAAACAGCTCACTCTGCAAGCGGT
TTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

87.968

100

0.88
  comM Vibrio cholerae strain A1552

84.221

100

0.842
  comM Haemophilus influenzae Rd KW20

65.089

100

0.651
  comM Glaesserella parasuis strain SC1401

62.846

99.803

0.627
  comM Legionella pneumophila str. Paris

50.202

97.83

0.491
  comM Legionella pneumophila strain ERS1305867

50.202

97.83

0.491
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.11

100

0.432

Multiple sequence alignment