Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AAGT95_RS07190 Genome accession   NZ_CP151919
Coordinates   1563911..1565431 (+) Length   506 a.a.
NCBI ID   WP_342596033.1    Uniprot ID   -
Organism   Salinicola lusitanus strain LLJ914     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1558911..1570431
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAGT95_RS07165 (AAGT95_07165) - 1559959..1560735 (+) 777 WP_110602074.1 ferredoxin--NADP reductase -
  AAGT95_RS07170 (AAGT95_07170) glnK 1560988..1561326 (-) 339 WP_075568466.1 P-II family nitrogen regulator -
  AAGT95_RS07175 (AAGT95_07175) - 1561495..1562745 (-) 1251 WP_110597807.1 ammonium transporter -
  AAGT95_RS07180 (AAGT95_07180) - 1562771..1563109 (-) 339 WP_110707158.1 P-II family nitrogen regulator -
  AAGT95_RS07185 (AAGT95_07185) - 1563408..1563734 (+) 327 WP_110597806.1 accessory factor UbiK family protein -
  AAGT95_RS07190 (AAGT95_07190) comM 1563911..1565431 (+) 1521 WP_342596033.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AAGT95_RS07195 (AAGT95_07195) - 1565445..1566557 (-) 1113 WP_342596034.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme -
  AAGT95_RS07200 (AAGT95_07200) - 1566582..1567079 (-) 498 WP_342596035.1 hypothetical protein -
  AAGT95_RS07205 (AAGT95_07205) - 1567076..1568071 (-) 996 WP_342596036.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54332.63 Da        Isoelectric Point: 8.7630

>NTDB_id=981171 AAGT95_RS07190 WP_342596033.1 1563911..1565431(+) (comM) [Salinicola lusitanus strain LLJ914]
MTLAIVRARASLGLEAPEVLIEVHLSNGLPGLTLVGLPEAAVKESRERVRSALINAGFEFPSRRITLNLAPADLPKDGGR
FDLPIALGILMASGQVPVEAAERLEVVGELALDGALRPVTGALPTALAARRSGRGLIVPLANADEAALADGVEVFAAGHL
LEVVGHLLGREKLVAHQFGAPVNAELPQPDMADVKGQHQARRALEVAAAGGHNLLLAGPPGTGKTMLASRLAGILPPLTQ
DESLEVAAVRSVCGLPIMERWGQRPFRNPHHTSSSVALVGGGARPRPGEISLAHQGVLFLDELPEFDRHVLEVLREPMES
AQILISRANHQRRFPARFQLVAAMNPCPCGHLGDPRQRCHCSSAQIQRYQSRLSGPLLDRIDLQVEVPALPATQLTDQTP
GESSASVRKRVLAARRRQQARGHLNAHLPGPELEAACALSAYERQWFASVLDRLNLSARAYHRVLRVALTLADLGGEARV
GKAQLMEAIGYRQLDRMLKSNDPMRA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=981171 AAGT95_RS07190 WP_342596033.1 1563911..1565431(+) (comM) [Salinicola lusitanus strain LLJ914]
ATGACGCTTGCCATCGTGCGCGCCCGCGCCAGCCTCGGACTCGAGGCCCCCGAAGTGCTGATCGAGGTTCATCTGAGTAA
CGGTTTGCCAGGGTTGACGCTGGTGGGCCTGCCCGAGGCCGCGGTCAAGGAGAGTCGCGAACGGGTTCGCAGCGCGCTCA
TCAACGCCGGTTTCGAGTTTCCTTCACGTCGCATCACGCTCAACCTGGCGCCTGCCGACCTGCCCAAGGATGGCGGTCGC
TTCGATCTGCCCATTGCGCTGGGCATTCTGATGGCGTCCGGCCAGGTTCCCGTCGAGGCGGCCGAACGGCTCGAAGTCGT
CGGCGAGCTGGCGCTGGACGGTGCGCTGCGGCCGGTCACGGGCGCACTCCCGACGGCACTGGCGGCGCGGCGCTCAGGCC
GGGGGCTTATCGTTCCGCTCGCCAATGCCGATGAGGCGGCATTGGCCGACGGCGTCGAGGTGTTCGCGGCGGGGCATCTG
CTCGAGGTCGTGGGCCATTTACTCGGTCGCGAGAAGCTCGTTGCGCACCAATTTGGCGCGCCCGTCAACGCGGAACTGCC
CCAACCGGACATGGCAGATGTCAAAGGGCAGCATCAGGCGCGCCGGGCACTGGAGGTCGCGGCGGCGGGTGGTCACAACC
TGTTGCTGGCGGGGCCGCCAGGCACGGGCAAGACCATGTTGGCGAGCCGGCTGGCCGGCATTCTGCCACCGCTGACACAG
GATGAGTCGCTCGAGGTGGCGGCGGTACGGTCGGTGTGCGGGCTGCCGATCATGGAGCGCTGGGGGCAGCGGCCGTTTCG
CAATCCGCACCACACCTCGAGCAGCGTGGCGCTGGTGGGCGGCGGTGCGCGGCCGCGGCCCGGCGAGATCTCGCTCGCGC
ACCAGGGCGTGCTGTTTCTGGATGAACTGCCGGAGTTCGACCGCCACGTGCTGGAAGTGCTGCGGGAGCCGATGGAGTCG
GCGCAGATCCTGATCTCCCGGGCCAATCATCAGCGCCGCTTTCCGGCCCGTTTTCAGCTCGTCGCGGCGATGAACCCCTG
CCCCTGTGGCCATCTCGGCGATCCGCGTCAGCGCTGCCACTGCAGCTCCGCCCAGATCCAGCGCTACCAGTCGCGTCTGT
CCGGCCCCTTGCTGGACCGGATCGATCTGCAGGTCGAGGTGCCGGCGCTGCCGGCCACCCAACTGACCGATCAGACGCCT
GGTGAGTCTTCCGCCAGCGTGAGGAAGCGGGTTCTCGCCGCCCGCCGGCGCCAGCAAGCGCGGGGCCATCTCAACGCCCA
TCTGCCCGGCCCCGAGCTGGAAGCCGCCTGCGCCTTGTCCGCGTATGAGCGGCAGTGGTTCGCCAGCGTGCTGGATCGAC
TCAATCTTTCCGCGCGGGCCTATCACCGCGTATTACGGGTGGCGCTGACCCTGGCCGACCTCGGCGGGGAAGCGCGGGTC
GGCAAGGCGCAACTGATGGAGGCGATCGGCTATCGCCAGCTGGACCGCATGCTGAAGTCCAACGATCCCATGCGAGCGTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-393)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.262

99.407

0.559
  comM Haemophilus influenzae Rd KW20

53.282

100

0.545
  comM Vibrio campbellii strain DS40M4

54.762

99.605

0.545
  comM Glaesserella parasuis strain SC1401

54.545

100

0.545
  comM Legionella pneumophila str. Paris

49.119

100

0.496
  comM Legionella pneumophila strain ERS1305867

49.119

100

0.496
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

48.228

100

0.484

Multiple sequence alignment