Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AAGT95_RS04220 Genome accession   NZ_CP151919
Coordinates   910391..910990 (-) Length   199 a.a.
NCBI ID   WP_342595659.1    Uniprot ID   -
Organism   Salinicola lusitanus strain LLJ914     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 905391..915990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAGT95_RS04210 (AAGT95_04210) pgaB 905512..907659 (-) 2148 WP_342595657.1 poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB -
  AAGT95_RS04215 (AAGT95_04215) pgaA 907659..909689 (-) 2031 WP_342595658.1 poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA -
  AAGT95_RS04220 (AAGT95_04220) ssb 910391..910990 (-) 600 WP_342595659.1 single-stranded DNA-binding protein Machinery gene
  AAGT95_RS04225 (AAGT95_04225) - 911025..912407 (-) 1383 WP_110603332.1 MFS transporter -
  AAGT95_RS04230 (AAGT95_04230) uvrA 912569..915421 (+) 2853 WP_342595660.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21925.88 Da        Isoelectric Point: 5.2421

>NTDB_id=981163 AAGT95_RS04220 WP_342595659.1 910391..910990(-) (ssb) [Salinicola lusitanus strain LLJ914]
MARGVNKVILIGNLGQDPEVRFLPSGNPVCNLRIATTDSWTDRQSGQRQERTEWHSVVLFNKLAEIAQQYVKKGSRIYIE
GRLQTRKWQGQDGQDRYSTEIVGNDMQMLDSRGGGQGGGDYAQPQGQYGGAPQNGGYDQPPQQGGYGGNPQQPQQPQQRP
AQGQRPPQQGQPASQPNQNPNYGAPNPGSFDDFDDEIPF

Nucleotide


Download         Length: 600 bp        

>NTDB_id=981163 AAGT95_RS04220 WP_342595659.1 910391..910990(-) (ssb) [Salinicola lusitanus strain LLJ914]
ATGGCCCGAGGTGTAAACAAAGTCATCCTGATCGGCAACCTGGGACAGGATCCGGAAGTGCGCTTCCTGCCCTCGGGGAA
TCCGGTGTGCAACCTGCGCATCGCGACTACCGATAGCTGGACCGATCGCCAGAGCGGCCAGCGCCAGGAACGTACTGAAT
GGCACAGCGTGGTGCTGTTCAACAAGCTGGCGGAGATCGCCCAGCAGTACGTCAAGAAAGGTTCGCGGATCTATATCGAG
GGCCGCCTGCAGACTCGCAAATGGCAGGGCCAGGACGGTCAGGATCGCTACTCGACCGAAATCGTCGGCAACGACATGCA
GATGCTGGACTCTCGTGGCGGCGGCCAGGGCGGCGGAGATTACGCCCAGCCCCAGGGGCAGTATGGCGGTGCGCCGCAGA
ATGGTGGCTACGACCAGCCGCCGCAGCAGGGCGGTTACGGCGGCAACCCGCAACAGCCGCAACAACCGCAGCAGCGCCCG
GCTCAGGGGCAGCGCCCGCCGCAGCAGGGCCAGCCCGCCTCGCAACCGAACCAGAATCCGAACTACGGCGCGCCGAACCC
CGGTAGCTTCGACGACTTCGACGACGAGATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.471

100

0.528
  ssb Glaesserella parasuis strain SC1401

45.192

100

0.472
  ssb Neisseria gonorrhoeae MS11

46.154

97.99

0.452
  ssb Neisseria meningitidis MC58

44.724

100

0.447

Multiple sequence alignment