Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AAGA51_RS13530 Genome accession   NZ_CP151842
Coordinates   2930289..2930825 (-) Length   178 a.a.
NCBI ID   WP_042489350.1    Uniprot ID   A0A2J8GTJ6
Organism   Vibrio diazotrophicus strain ATCC 33466     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2925289..2935825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAGA51_RS13510 - 2925731..2926075 (-) 345 WP_269350805.1 MSHA biogenesis protein MshK -
  AAGA51_RS13515 gspM 2926068..2926709 (-) 642 WP_042489340.1 type II secretion system protein GspM -
  AAGA51_RS13520 - 2926706..2928154 (-) 1449 WP_042489343.1 hypothetical protein -
  AAGA51_RS13525 csrD 2928161..2930152 (-) 1992 WP_042489346.1 RNase E specificity factor CsrD -
  AAGA51_RS13530 ssb 2930289..2930825 (-) 537 WP_042489350.1 single-stranded DNA-binding protein Machinery gene
  AAGA51_RS13535 qstR 2931117..2931764 (+) 648 WP_042489353.1 LuxR C-terminal-related transcriptional regulator Regulator
  AAGA51_RS13540 galU 2931911..2932780 (+) 870 WP_042489356.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  AAGA51_RS13545 uvrA 2932936..2935758 (+) 2823 WP_042489358.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19575.61 Da        Isoelectric Point: 5.2358

>NTDB_id=981101 AAGA51_RS13530 WP_042489350.1 2930289..2930825(-) (ssb) [Vibrio diazotrophicus strain ATCC 33466]
MASRGVNKVILVGNLGGDPEVRYMPSGGAVANITIATSETWRDKATGEQREKTEWHRVALYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGYNGIMQMLGGRQQQAGGAGQGQPQQQGGWGQPQQPARQSQPAYQPAAQQAPQQA
PQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=981101 AAGA51_RS13530 WP_042489350.1 2930289..2930825(-) (ssb) [Vibrio diazotrophicus strain ATCC 33466]
ATGGCAAGCCGTGGCGTGAATAAAGTAATTTTGGTGGGCAACTTGGGTGGAGATCCTGAAGTTCGCTATATGCCAAGTGG
CGGTGCTGTTGCAAACATCACCATTGCAACGTCAGAAACATGGCGTGATAAAGCAACGGGCGAACAGCGTGAGAAAACTG
AGTGGCACCGAGTTGCTCTTTATGGAAAACTTGCAGAAGTAGCGGGTGAGTACCTGCGTAAAGGTTCTCAAGTTTACATT
GAGGGTCAGTTACAAACTCGTAAGTGGCAAGATCAAAGTGGTCAAGATCGTTACTCAACAGAAGTAGTTGTGCAAGGTTA
CAACGGCATTATGCAAATGCTTGGTGGTCGTCAGCAACAAGCTGGAGGCGCGGGTCAAGGTCAACCTCAGCAACAAGGCG
GATGGGGGCAACCTCAACAGCCAGCGAGACAGAGCCAACCAGCGTATCAGCCAGCTGCTCAGCAAGCACCTCAACAAGCT
CCTCAGCCTCAATACAATGAGCCGCCAATGGATTTTGACGACGACATCCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2J8GTJ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

85.635

100

0.871
  ssb Glaesserella parasuis strain SC1401

52.941

100

0.556
  ssb Neisseria gonorrhoeae MS11

47.753

100

0.478
  ssb Neisseria meningitidis MC58

47.753

100

0.478

Multiple sequence alignment