Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   AAGA51_RS13535 Genome accession   NZ_CP151842
Coordinates   2931117..2931764 (+) Length   215 a.a.
NCBI ID   WP_042489353.1    Uniprot ID   A0A2J8GTJ8
Organism   Vibrio diazotrophicus strain ATCC 33466     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2926117..2936764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAGA51_RS13520 - 2926706..2928154 (-) 1449 WP_042489343.1 hypothetical protein -
  AAGA51_RS13525 csrD 2928161..2930152 (-) 1992 WP_042489346.1 RNase E specificity factor CsrD -
  AAGA51_RS13530 ssb 2930289..2930825 (-) 537 WP_042489350.1 single-stranded DNA-binding protein Machinery gene
  AAGA51_RS13535 qstR 2931117..2931764 (+) 648 WP_042489353.1 LuxR C-terminal-related transcriptional regulator Regulator
  AAGA51_RS13540 galU 2931911..2932780 (+) 870 WP_042489356.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  AAGA51_RS13545 uvrA 2932936..2935758 (+) 2823 WP_042489358.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 25106.94 Da        Isoelectric Point: 7.5786

>NTDB_id=981102 AAGA51_RS13535 WP_042489353.1 2931117..2931764(+) (qstR) [Vibrio diazotrophicus strain ATCC 33466]
MPKHNYARTIYFLCMDDTCVPEQLEKALELLALPIPQILPEQLLRNYHTDKHKILLINYQEHHLIRQNLKALKITSPHFE
TILFNVDKRLHTEELLTFGNLKGLFYQDDTPESICEGLGEIINGQNWLPRHASSQLLHYYRYHFQAHHAQASVDLTAREI
QILRCLQTGASNMQMAESLFISEFTVKSHLYQIFKKLSVKNRVQAISWANQNLLS

Nucleotide


Download         Length: 648 bp        

>NTDB_id=981102 AAGA51_RS13535 WP_042489353.1 2931117..2931764(+) (qstR) [Vibrio diazotrophicus strain ATCC 33466]
ATGCCAAAACACAACTATGCCAGAACCATATATTTTCTTTGCATGGACGACACATGCGTCCCTGAGCAATTAGAAAAAGC
TCTAGAACTTCTTGCTTTGCCAATACCTCAAATTCTCCCTGAGCAGTTACTTCGAAATTATCACACAGATAAACACAAAA
TTTTGCTGATTAACTATCAGGAACATCATCTGATTAGACAAAATTTAAAAGCGTTAAAGATTACGAGTCCTCACTTTGAA
ACGATTCTGTTTAACGTTGATAAAAGGCTGCATACAGAAGAATTGCTCACTTTTGGTAACTTAAAAGGGCTGTTTTATCA
GGATGATACTCCCGAGAGTATCTGTGAAGGCTTGGGAGAAATAATCAACGGACAAAATTGGCTTCCACGTCATGCATCAA
GCCAGCTTCTACATTATTACCGATATCATTTTCAGGCCCACCACGCACAAGCTTCGGTTGACCTCACAGCAAGAGAAATC
CAGATTTTGCGTTGCTTACAGACTGGGGCATCAAATATGCAAATGGCAGAAAGTCTTTTTATCAGCGAGTTTACAGTGAA
GTCTCATTTGTATCAGATATTTAAAAAGCTTTCGGTGAAAAACCGAGTTCAAGCCATCAGTTGGGCAAATCAAAATCTAC
TTTCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2J8GTJ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

71.028

99.535

0.707
  qstR Vibrio parahaemolyticus RIMD 2210633

56.221

100

0.567
  qstR Vibrio campbellii strain DS40M4

56.221

100

0.567

Multiple sequence alignment