Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AAGA51_RS00105 Genome accession   NZ_CP151842
Coordinates   25982..27508 (+) Length   508 a.a.
NCBI ID   WP_042489456.1    Uniprot ID   -
Organism   Vibrio diazotrophicus strain ATCC 33466     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 20982..32508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAGA51_RS00090 ilvD 21651..23492 (-) 1842 WP_042489464.1 dihydroxy-acid dehydratase -
  AAGA51_RS00095 ilvM 23548..23832 (-) 285 WP_042489461.1 acetolactate synthase 2 small subunit -
  AAGA51_RS00100 ilvG 23845..25491 (-) 1647 WP_042489459.1 acetolactate synthase 2 catalytic subunit -
  AAGA51_RS00105 comM 25982..27508 (+) 1527 WP_042489456.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AAGA51_RS00110 - 27649..28527 (+) 879 WP_081878772.1 acyltransferase -
  AAGA51_RS00115 - 28566..29168 (-) 603 WP_042489451.1 thiol:disulfide interchange protein DsbA/DsbL -
  AAGA51_RS00120 - 29203..30189 (-) 987 WP_042489448.1 serine/threonine protein kinase -
  AAGA51_RS00125 ccoG 30241..31665 (-) 1425 WP_042489445.1 cytochrome c oxidase accessory protein CcoG -
  AAGA51_RS00130 - 31932..32201 (-) 270 WP_042489442.1 YihD family protein -
  AAGA51_RS00135 - 32314..32481 (-) 168 WP_102955528.1 hypothetical protein -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55346.82 Da        Isoelectric Point: 9.4120

>NTDB_id=981067 AAGA51_RS00105 WP_042489456.1 25982..27508(+) (comM) [Vibrio diazotrophicus strain ATCC 33466]
MGLAIIHSRASVGVEAPSVTVEVHISNGMPGFTLVGLPETTVKESRDRVRSAIINSQFVFPAKKITVNLAPADLPKEGGR
FDLPIALGILAASNQISQTSLNKHEFIGELALSGELRRVKGVLPAALAASKKSRCLVVPHWNGDQAALVDRKLHKSAQTL
LEVCADLCGHKTLSLFESSNIAPSVRTQRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPPMSD
VEAMETASVASLTQQEINIHNWKQRPFRSPHHSSSMAALVGGGSIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIIISRVQGKTRFPARFQLVGALNPSPTGYHEGEQARVNPQVILRYLSRLSGPLLDRFDMSIEIPALPKGTLSNGGDR
GEPTAMVKERVLQAREIMLERSGKVNALLQSREIEQVCPLTKPDAEFLENALHRLGLSVRAYHRIIKVARTIADLQGELQ
INRAHLAEALGYRAMDRLLKQLTSQSIS

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=981067 AAGA51_RS00105 WP_042489456.1 25982..27508(+) (comM) [Vibrio diazotrophicus strain ATCC 33466]
ATGGGACTCGCGATTATTCATAGCCGGGCAAGTGTGGGTGTGGAAGCACCTTCAGTGACAGTGGAAGTTCATATTAGTAA
CGGCATGCCGGGGTTCACTCTGGTGGGGTTACCTGAAACCACCGTAAAGGAATCAAGAGACAGAGTGCGTAGTGCCATTA
TCAATTCTCAGTTTGTGTTTCCAGCCAAAAAAATCACGGTCAACTTAGCTCCGGCTGATCTGCCCAAGGAAGGAGGAAGG
TTCGATTTGCCTATTGCTCTAGGCATCTTGGCTGCTTCGAACCAAATTTCGCAAACCAGTTTGAATAAACACGAATTTAT
CGGTGAACTTGCTCTGTCGGGTGAGCTTCGTCGCGTAAAGGGAGTGTTACCAGCGGCGTTAGCGGCGTCGAAAAAGAGTC
GTTGTTTGGTTGTTCCGCATTGGAATGGCGATCAGGCAGCTCTCGTAGACAGAAAGCTACATAAATCAGCGCAAACTTTA
CTGGAAGTGTGTGCAGACCTTTGTGGACACAAAACACTGAGCTTGTTTGAGAGTTCAAATATCGCACCAAGCGTACGCAC
TCAAAGAGACTTGCAAGATATTATCGGTCAACAACAGGGCAAGCGAGCTTTAGAAATTGCAGCGGCGGGTAACCATAATC
TGCTGTTTTTGGGGCCACCCGGAACAGGCAAAACCATGCTGGCTTCGCGCTTGTGTGATTTATTGCCGCCAATGAGCGAC
GTTGAGGCGATGGAAACCGCCTCTGTCGCTTCTCTCACTCAGCAAGAGATTAATATTCACAACTGGAAGCAAAGGCCGTT
TCGTTCGCCTCATCACTCCAGCTCGATGGCGGCGTTAGTGGGCGGAGGTTCTATTCCTCGTCCGGGAGAAATTTCTCTCG
CTCACAATGGATTGCTGTTTCTCGACGAGATGCCCGAGTTCGAACGAAAAGTCTTAGACTCACTACGTGAACCTTTGGAA
TCTGGCGAAATCATTATTTCTCGCGTGCAAGGTAAGACTCGTTTTCCTGCCCGCTTTCAGCTGGTGGGGGCATTAAACCC
AAGTCCGACGGGGTATCACGAAGGAGAGCAGGCGAGAGTTAATCCGCAGGTGATTTTGCGTTATTTGAGTCGCCTGTCTG
GCCCATTGCTCGACAGGTTTGATATGTCGATAGAGATCCCCGCTTTACCGAAAGGCACGCTGTCTAATGGTGGAGACAGG
GGAGAGCCTACGGCGATGGTCAAAGAGCGAGTGCTGCAAGCTCGTGAAATAATGTTAGAGCGAAGCGGAAAAGTGAATGC
CTTGCTGCAAAGCCGAGAGATAGAGCAAGTTTGCCCTTTAACTAAGCCGGATGCTGAGTTTCTAGAAAATGCACTGCACC
GTTTGGGGTTGTCTGTTCGGGCGTATCATCGCATCATCAAAGTCGCGCGTACGATTGCTGATCTACAGGGCGAGTTGCAG
ATAAATCGTGCTCATCTTGCGGAAGCATTGGGTTATCGTGCGATGGACAGGTTACTCAAACAACTTACTTCTCAGTCGAT
TAGCTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

85.996

99.803

0.858
  comM Vibrio campbellii strain DS40M4

84.024

99.803

0.839
  comM Haemophilus influenzae Rd KW20

66.929

100

0.669
  comM Glaesserella parasuis strain SC1401

65.49

100

0.657
  comM Legionella pneumophila str. Paris

49.597

97.638

0.484
  comM Legionella pneumophila strain ERS1305867

49.597

97.638

0.484
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.545

100

0.445

Multiple sequence alignment