Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   ABXG87_RS02725 Genome accession   NZ_AP031488
Coordinates   534907..536877 (+) Length   656 a.a.
NCBI ID   WP_014632817.1    Uniprot ID   -
Organism   Streptococcus salivarius strain NBRC 13956     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 529907..541877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXG87_RS02700 (Ssa13956_04740) - 530627..531202 (-) 576 WP_037604672.1 CYTH domain-containing protein -
  ABXG87_RS02705 (Ssa13956_04750) - 531298..531972 (+) 675 WP_045768515.1 GTP pyrophosphokinase family protein -
  ABXG87_RS02710 (Ssa13956_04760) - 531944..532780 (+) 837 WP_002884507.1 NAD kinase -
  ABXG87_RS02715 (Ssa13956_04770) - 532777..533673 (+) 897 WP_045772225.1 RluA family pseudouridine synthase -
  ABXG87_RS02720 (Ssa13956_04780) pta 533687..534670 (+) 984 WP_045772226.1 phosphate acetyltransferase -
  ABXG87_RS02725 (Ssa13956_04790) amiA 534907..536877 (+) 1971 WP_014632817.1 peptide ABC transporter substrate-binding protein Regulator
  ABXG87_RS02730 (Ssa13956_04800) amiC 537411..538904 (+) 1494 WP_014632819.1 ABC transporter permease Regulator
  ABXG87_RS02735 (Ssa13956_04810) amiD 538904..539830 (+) 927 WP_002886846.1 oligopeptide ABC transporter permease OppC Regulator
  ABXG87_RS02740 (Ssa13956_04820) amiE 539840..540925 (+) 1086 WP_045001575.1 ABC transporter ATP-binding protein Regulator
  ABXG87_RS02745 (Ssa13956_04830) - 540918..541847 (+) 930 WP_014632821.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 72643.94 Da        Isoelectric Point: 5.8640

>NTDB_id=98074 ABXG87_RS02725 WP_014632817.1 534907..536877(+) (amiA) [Streptococcus salivarius strain NBRC 13956]
MKKSKWLALAGVALLSVGALAACSSKSSTSGTTYSYVYQSDPETLDYVSTSKATTTDTVTNGVDGLLGYDKYGNLIPSVA
KDWTVSADGLTYTYKIRKGVKWYTSDGEEYADVTAKDFVTGLKHAADKKSEGIYLAKDSVVGLSDYLSGANKDFSKVGVK
ALDDYTLQYTLKQAEPYWNSKVTYSLFWPINEDFLKSKGNGFGKSTDPSSILYNGPFILKSLTAKSSIELTKNEHYWDKK
NVHFDNVKLSYYDGSDQESLERNFTDGVYSKARVFPTSSNYSSVEKEYKNDIFYTQPGPEIQGIGVNIDRQSYKHTAKKT
DIEKESTKKALLNKDFRQSVNFSIDRTAYSAQINGKAGAAQAIRNIFVKPEFVYAGDKSFGELVSEKLPSYGSEWSGINV
ADGQDGIYNTNKAKEKFEKAKAALQAEGVQFPIHLDFPVDESAKTAVARAQSVKQTVEEALGKENVVIDINQMSSDDLNN
ITYYASNAAAEDWDISNGVAWGPDYEDPSTYLDIFKTTASENTKTFMGFDDPNSAAAAKVGLKDYDTLVDAASKETNDLN
LRYERYADAQAWLTDSSLFMPTMVNSGAAPMISRMVPFSGAYSQIGNKGVDTYFKYLKPQKDVVTKKDYDSAREKWLKEK
KVSNDKAQKDLAKHVK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=98074 ABXG87_RS02725 WP_014632817.1 534907..536877(+) (amiA) [Streptococcus salivarius strain NBRC 13956]
ATGAAAAAAAGCAAATGGTTAGCCCTTGCGGGTGTGGCACTCCTCAGTGTAGGTGCCTTAGCGGCTTGTTCTTCTAAGTC
AAGTACTAGTGGTACTACTTATAGCTATGTTTATCAGTCTGATCCTGAGACATTGGACTATGTTTCTACTAGTAAGGCAA
CGACAACGGATACTGTAACAAATGGTGTTGACGGTCTTCTTGGTTATGACAAATATGGTAATTTGATTCCATCTGTTGCT
AAAGATTGGACAGTCTCTGCTGATGGTTTGACCTATACATATAAGATTCGTAAGGGTGTTAAGTGGTACACCTCTGATGG
AGAAGAGTACGCTGACGTTACTGCCAAGGACTTCGTGACTGGTCTTAAGCATGCAGCAGATAAAAAGTCAGAGGGGATAT
ATTTAGCAAAGGATTCAGTTGTCGGTTTATCAGACTACCTATCTGGTGCTAATAAAGATTTCTCAAAGGTTGGTGTTAAG
GCACTAGATGATTACACATTACAATACACATTAAAACAGGCGGAGCCATACTGGAATTCCAAGGTAACTTATTCGCTATT
TTGGCCAATCAATGAAGATTTTCTTAAGTCTAAAGGGAATGGCTTTGGAAAGTCAACGGATCCATCATCAATTCTTTATA
ACGGTCCTTTTATCTTGAAATCTCTAACGGCTAAATCGTCTATTGAGTTAACTAAAAACGAACATTATTGGGATAAGAAA
AATGTTCACTTTGATAATGTTAAATTATCTTATTATGATGGTTCTGATCAAGAATCATTAGAACGTAACTTTACAGATGG
TGTTTATAGTAAGGCGCGTGTCTTCCCAACGAGTTCTAATTATTCTTCTGTTGAAAAGGAATATAAAAATGATATTTTCT
ACACACAACCTGGACCAGAAATTCAGGGTATTGGGGTAAATATTGATCGTCAAAGTTACAAACATACTGCTAAAAAAACA
GATATTGAGAAAGAATCAACTAAAAAGGCCCTTCTTAACAAGGATTTCCGTCAGTCTGTTAACTTTTCTATTGACCGCAC
TGCTTACTCAGCTCAAATTAATGGTAAAGCTGGTGCTGCTCAAGCAATTCGTAATATCTTTGTCAAACCAGAATTTGTAT
ATGCAGGTGATAAATCATTTGGAGAATTAGTGTCTGAGAAATTACCTTCTTATGGTAGCGAATGGTCAGGTATTAATGTA
GCCGATGGACAGGATGGTATTTATAATACTAACAAGGCTAAAGAAAAGTTTGAGAAAGCTAAGGCAGCTCTTCAAGCAGA
AGGAGTTCAATTTCCTATCCATTTAGATTTTCCAGTTGATGAATCAGCGAAAACTGCTGTTGCACGTGCACAATCAGTGA
AACAAACTGTTGAAGAAGCTCTAGGTAAAGAAAATGTTGTTATTGATATTAATCAAATGTCTTCTGATGATTTGAATAAT
ATTACATATTATGCTTCAAATGCTGCCGCAGAGGATTGGGATATTTCAAATGGGGTAGCTTGGGGACCAGATTACGAAGA
TCCATCTACTTATCTGGATATTTTTAAGACAACAGCAAGTGAGAACACTAAGACATTTATGGGATTTGATGATCCAAATA
GTGCTGCTGCTGCTAAAGTTGGTCTAAAAGATTACGATACTTTGGTTGATGCTGCTTCAAAAGAAACAAACGACTTGAAT
CTTCGTTATGAACGATATGCAGATGCTCAAGCATGGTTGACAGATAGTTCTCTATTTATGCCAACGATGGTAAATAGTGG
TGCTGCCCCTATGATTTCTCGTATGGTTCCATTCTCGGGGGCTTACTCACAAATTGGAAATAAAGGAGTAGATACTTACT
TCAAGTATCTCAAGCCACAAAAAGATGTTGTTACTAAAAAAGATTATGATTCAGCTCGTGAAAAATGGCTTAAAGAGAAG
AAAGTGTCTAACGACAAGGCTCAAAAAGATCTTGCGAAACACGTTAAATAA

Domains

Predicted by InterProScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

75.61

100

0.756
  amiA3 Streptococcus thermophilus LMG 18311

73.973

100

0.741
  amiA3 Streptococcus thermophilus LMD-9

73.82

100

0.739

Multiple sequence alignment