Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   R9C51_RS11005 Genome accession   NZ_AP026921
Coordinates   2123279..2123941 (-) Length   220 a.a.
NCBI ID   WP_001866538.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700027     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2118279..2128941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R9C51_RS10980 (PC0027_21290) - 2118429..2118695 (-) 267 WP_001278167.1 Veg family protein -
  R9C51_RS10985 (PC0027_21300) dnaB 2118697..2120049 (-) 1353 WP_000852486.1 replicative DNA helicase -
  R9C51_RS10990 (PC0027_21310) rplI 2120093..2120545 (-) 453 WP_000864220.1 50S ribosomal protein L9 -
  R9C51_RS10995 (PC0027_21320) - 2120542..2122515 (-) 1974 WP_050203343.1 DHH family phosphoesterase -
  R9C51_RS11000 (PC0027_21330) hpf 2122651..2123199 (-) 549 WP_000599107.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  R9C51_RS11005 (PC0027_21340) comFC/cflB 2123279..2123941 (-) 663 WP_001866538.1 ComF family protein Machinery gene
  R9C51_RS11010 (PC0027_21350) comFA/cflA 2123938..2125236 (-) 1299 WP_317827165.1 DEAD/DEAH box helicase Machinery gene
  R9C51_RS11015 (PC0027_21360) - 2125292..2125927 (+) 636 WP_000395739.1 YigZ family protein -
  R9C51_RS11020 (PC0027_21370) cysK 2126176..2127096 (+) 921 WP_000029866.1 cysteine synthase A -
  R9C51_RS11025 - 2127171..2127709 (-) 539 Protein_2139 transposase -
  R9C51_RS11030 (PC0027_21380) - 2127682..2127969 (+) 288 Protein_2140 transposase -
  R9C51_RS11035 tnpB 2128211..2128339 (-) 129 WP_226959232.1 IS66 family insertion sequence element accessory protein TnpB -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25275.11 Da        Isoelectric Point: 7.3688

>NTDB_id=98075 R9C51_RS11005 WP_001866538.1 2123279..2123941(-) (comFC/cflB) [Streptococcus pneumoniae strain PZ900700027]
MKCLLCGQTMKTVLTFSSLLLLRNDDSCLCSDCDSTFERIGEENCPNCMKTELSTKCQDCQFWCKEGVEVSHRAIFTYNQ
AMKDFFSRYKFDGDFLLRKVFASFLSEELKKYKEYQFVVIPLSPDRYANRGFNQVEGLVEAAGFEYLDLLEKREERASSS
KNRSERLGTELPFFIKSGVTIPKKILLIDDIYTTGATINRVKKLLEEAGAKDVKTFSLVR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=98075 R9C51_RS11005 WP_001866538.1 2123279..2123941(-) (comFC/cflB) [Streptococcus pneumoniae strain PZ900700027]
ATGAAGTGCTTGTTATGTGGGCAGACTATGAAGACTGTTTTAACTTTTAGTAGTCTCTTACTTCTGAGGAATGATGACTC
TTGTCTTTGTTCAGACTGTGATTCTACTTTTGAAAGAATTGGGGAAGAGAACTGTCCAAATTGTATGAAAACAGAGTTGT
CAACAAAGTGTCAAGATTGTCAATTTTGGTGTAAAGAGGGAGTTGAAGTCAGTCATAGAGCGATTTTTACTTACAATCAA
GCTATGAAGGATTTTTTCAGTCGGTATAAGTTTGATGGAGACTTCCTGTTAAGAAAAGTTTTCGCTTCATTTTTAAGTGA
GGAGTTGAAAAAGTACAAAGAGTATCAATTTGTTGTAATTCCCCTAAGTCCTGATAGATATGCTAATAGAGGATTTAATC
AGGTTGAGGGCTTGGTAGAGGCAGCAGGCTTTGAGTATCTGGATTTATTAGAGAAAAGAGAAGAGAGAGCCAGTTCTTCT
AAAAATCGTTCAGAGCGCTTGGGGACAGAACTTCCTTTCTTTATTAAAAGTGGAGTCACTATTCCTAAAAAAATCCTACT
TATAGATGATATCTATACTACAGGAGCAACTATAAATCGTGTTAAGAAACTGTTGGAAGAAGCTGGTGCTAAGGATGTAA
AAACATTTTCCCTTGTAAGATGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(153-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae TIGR4

99.545

100

0.995
  comFC/cflB Streptococcus pneumoniae Rx1

99.091

100

0.991
  comFC/cflB Streptococcus pneumoniae D39

99.091

100

0.991
  comFC/cflB Streptococcus pneumoniae R6

99.091

100

0.991
  comFC/cflB Streptococcus mitis SK321

91.818

100

0.918
  comFC/cflB Streptococcus mitis NCTC 12261

91.364

100

0.914

Multiple sequence alignment