Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   ABXG87_RS02730 Genome accession   NZ_AP031488
Coordinates   537411..538904 (+) Length   497 a.a.
NCBI ID   WP_014632819.1    Uniprot ID   -
Organism   Streptococcus salivarius strain NBRC 13956     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 532411..543904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXG87_RS02715 (Ssa13956_04770) - 532777..533673 (+) 897 WP_045772225.1 RluA family pseudouridine synthase -
  ABXG87_RS02720 (Ssa13956_04780) pta 533687..534670 (+) 984 WP_045772226.1 phosphate acetyltransferase -
  ABXG87_RS02725 (Ssa13956_04790) amiA 534907..536877 (+) 1971 WP_014632817.1 peptide ABC transporter substrate-binding protein Regulator
  ABXG87_RS02730 (Ssa13956_04800) amiC 537411..538904 (+) 1494 WP_014632819.1 ABC transporter permease Regulator
  ABXG87_RS02735 (Ssa13956_04810) amiD 538904..539830 (+) 927 WP_002886846.1 oligopeptide ABC transporter permease OppC Regulator
  ABXG87_RS02740 (Ssa13956_04820) amiE 539840..540925 (+) 1086 WP_045001575.1 ABC transporter ATP-binding protein Regulator
  ABXG87_RS02745 (Ssa13956_04830) - 540918..541847 (+) 930 WP_014632821.1 ATP-binding cassette domain-containing protein -
  ABXG87_RS02750 (Ssa13956_04840) - 541898..542683 (-) 786 WP_014632822.1 hypothetical protein -
  ABXG87_RS02755 (Ssa13956_04850) - 542695..543393 (-) 699 WP_002884466.1 ABC transporter ATP-binding protein -
  ABXG87_RS02760 (Ssa13956_04860) - 543398..543775 (-) 378 WP_014632823.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 55883.67 Da        Isoelectric Point: 10.0050

>NTDB_id=98075 ABXG87_RS02730 WP_014632819.1 537411..538904(+) (amiC) [Streptococcus salivarius strain NBRC 13956]
MKKYILLRTLRSLLSIFVVTALTYTIIYTMVPRRLIFRQDPNYNKIAKTADSKANYENTIYERMGYIDYYDTKELQEKAS
SLDKSVTTKPTKENKAIYQKYVDSLGHGWRLHQFKESKQFYATRDVPVLERVFGFYKHLFEFDNTGWVKDKTNPNLKRYI
RIENDPAIGWSVVGSGTKHKYLLYFNGQFPFVHQNFVKMNLGTSYPTYAEQGVLDVITQGQGQTQSSEVNFPTGKKISSV
DIYSRTYKSPSQADARDRSYYGNDPYTATKSRYQYPSMVTSSAIAGLIGLVLSYALAIPLGSYMARFKNTLFDSVSTGVL
TFLLSLPTIALVYIIRLIGSEIGLPDSFPILGAGDWRSYVLPSVILGLLSTPGLAIWIRRYMIDLQSQDFVRFARAKGLS
EQEISNKHIFKNAMVSLVSGIPASIVSVITGATLTETIFAFPGMGKMLIDSVRASNNAMVVGLVFIFTALTIFSLLVGDI
LMTIIDPRIKLTSKGGK

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=98075 ABXG87_RS02730 WP_014632819.1 537411..538904(+) (amiC) [Streptococcus salivarius strain NBRC 13956]
ATGAAAAAATACATTTTATTGAGAACCCTTCGTTCTCTATTGTCAATATTTGTCGTGACGGCCTTGACCTACACCATTAT
TTATACCATGGTGCCGAGGCGTCTGATTTTCAGACAGGACCCTAACTACAACAAGATTGCAAAGACAGCCGATTCGAAGG
CAAACTATGAAAATACAATCTATGAGCGAATGGGTTATATTGATTACTATGACACCAAGGAGTTGCAGGAAAAAGCTAGC
TCCCTTGATAAGTCAGTAACCACTAAGCCAACAAAAGAAAATAAAGCTATTTACCAAAAATATGTGGATAGTTTAGGACA
TGGCTGGCGTTTGCATCAATTCAAGGAAAGTAAGCAATTCTATGCGACACGTGATGTGCCTGTACTTGAACGTGTGTTTG
GCTTCTATAAGCACCTCTTTGAATTTGACAATACGGGATGGGTGAAAGATAAAACAAATCCAAACTTGAAACGATACATT
CGAATTGAAAATGATCCAGCTATTGGTTGGTCAGTGGTTGGTTCAGGGACTAAGCATAAATATCTGCTTTACTTTAACGG
TCAGTTCCCATTTGTTCACCAAAACTTCGTGAAGATGAACCTTGGTACATCTTACCCAACTTATGCTGAGCAAGGTGTTC
TTGATGTTATTACGCAAGGTCAAGGGCAAACACAAAGCTCTGAGGTCAACTTCCCTACTGGTAAGAAGATATCTTCAGTA
GATATCTACTCTCGTACTTATAAATCACCAAGTCAGGCTGATGCGAGAGATCGTTCTTACTATGGAAATGACCCATACAC
AGCTACCAAGAGTCGCTACCAATACCCATCAATGGTGACAAGTTCTGCCATTGCAGGTTTGATTGGTTTGGTCTTGTCTT
ATGCTTTGGCAATTCCATTGGGATCATACATGGCACGCTTTAAAAACACGCTCTTTGATAGTGTATCAACAGGTGTCTTG
ACTTTCTTGCTTTCACTACCAACCATCGCCTTGGTTTATATCATTCGTTTGATTGGTTCTGAGATTGGTCTTCCAGATTC
CTTCCCTATCTTGGGTGCAGGTGACTGGCGTTCATACGTCTTGCCATCTGTTATTCTCGGTCTCTTGTCAACACCAGGTC
TTGCGATTTGGATTCGTCGTTACATGATTGACTTGCAATCACAAGACTTCGTTCGTTTTGCACGTGCCAAAGGGTTGTCA
GAACAAGAAATTTCGAATAAACACATTTTCAAAAATGCTATGGTTTCCTTGGTTTCAGGAATCCCAGCATCTATCGTTAG
TGTTATTACAGGGGCAACTTTGACAGAAACAATCTTCGCCTTCCCTGGTATGGGTAAAATGTTGATCGACTCTGTTCGTG
CTTCAAATAACGCTATGGTTGTGGGTCTTGTATTTATTTTCACAGCTCTCACCATCTTCTCATTGCTTGTGGGTGATATC
CTTATGACTATAATTGACCCACGTATCAAATTGACATCTAAAGGAGGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(297-490)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

98.39

100

0.984
  amiC Streptococcus thermophilus LMG 18311

97.384

100

0.974
  amiC Streptococcus thermophilus LMD-9

97.384

100

0.974

Multiple sequence alignment