Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   ABXG87_RS02735 Genome accession   NZ_AP031488
Coordinates   538904..539830 (+) Length   308 a.a.
NCBI ID   WP_002886846.1    Uniprot ID   -
Organism   Streptococcus salivarius strain NBRC 13956     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 533904..544830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXG87_RS02725 (Ssa13956_04790) amiA 534907..536877 (+) 1971 WP_014632817.1 peptide ABC transporter substrate-binding protein Regulator
  ABXG87_RS02730 (Ssa13956_04800) amiC 537411..538904 (+) 1494 WP_014632819.1 ABC transporter permease Regulator
  ABXG87_RS02735 (Ssa13956_04810) amiD 538904..539830 (+) 927 WP_002886846.1 oligopeptide ABC transporter permease OppC Regulator
  ABXG87_RS02740 (Ssa13956_04820) amiE 539840..540925 (+) 1086 WP_045001575.1 ABC transporter ATP-binding protein Regulator
  ABXG87_RS02745 (Ssa13956_04830) - 540918..541847 (+) 930 WP_014632821.1 ATP-binding cassette domain-containing protein -
  ABXG87_RS02750 (Ssa13956_04840) - 541898..542683 (-) 786 WP_014632822.1 hypothetical protein -
  ABXG87_RS02755 (Ssa13956_04850) - 542695..543393 (-) 699 WP_002884466.1 ABC transporter ATP-binding protein -
  ABXG87_RS02760 (Ssa13956_04860) - 543398..543775 (-) 378 WP_014632823.1 GntR family transcriptional regulator -
  ABXG87_RS02765 (Ssa13956_04870) - 543957..544751 (+) 795 WP_013990229.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34607.77 Da        Isoelectric Point: 9.7054

>NTDB_id=98076 ABXG87_RS02735 WP_002886846.1 538904..539830(+) (amiD) [Streptococcus salivarius strain NBRC 13956]
MASIDKSKFQFVKRDDFASETIDAPAYSYWKSVMRQFFKKKSTVVMLGILIAIVLMSFIYPMFSKFDFNDVSKVNDFSLR
YVHPNAQYWFGTDSNGKSLFDSVWFGARNSILIAVIATFLNVVIGLLVGAVWGISKTFDMIMMEIYNIISNIPALLVVIV
LTYSLGAGFWNMIFAMTVTGWIGIAYTIRIQIMRYRDLEYNLASRTLGTPTAKIVVKNIMPQLVSVIVTMASQLLPGFIS
YEAFLSYFGLGLPVTTPSLGRLISDYAQNVTVNAYLFWIPLTTLILVSLALFIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=98076 ABXG87_RS02735 WP_002886846.1 538904..539830(+) (amiD) [Streptococcus salivarius strain NBRC 13956]
ATGGCTTCAATTGATAAAAGTAAGTTCCAATTTGTAAAGCGCGATGATTTTGCCTCTGAAACAATTGATGCACCAGCTTA
TTCTTACTGGAAATCAGTGATGCGTCAATTCTTTAAAAAGAAATCAACAGTAGTAATGTTGGGGATCTTGATTGCCATCG
TTTTGATGAGTTTCATCTATCCAATGTTCTCTAAATTTGACTTCAATGATGTCTCAAAAGTAAATGATTTCAGTTTGCGT
TATGTACATCCAAATGCTCAATACTGGTTCGGTACTGACAGTAATGGTAAGTCCCTCTTTGATAGTGTTTGGTTTGGAGC
TCGTAATTCTATCCTTATTGCTGTTATCGCTACCTTCCTTAACGTTGTTATTGGTTTGCTTGTAGGTGCTGTTTGGGGGA
TTTCTAAGACCTTCGATATGATTATGATGGAAATCTACAACATCATCTCAAATATTCCTGCCCTCCTTGTAGTTATCGTC
TTGACTTACTCATTGGGTGCTGGTTTTTGGAATATGATCTTTGCCATGACTGTCACAGGTTGGATTGGTATTGCCTATAC
CATTCGTATTCAAATCATGCGTTATCGTGATTTGGAGTACAACTTGGCTTCTCGTACACTGGGAACGCCAACTGCTAAGA
TTGTGGTTAAAAACATCATGCCGCAACTTGTGTCAGTTATCGTGACTATGGCTAGTCAGCTTTTGCCAGGATTTATCTCT
TACGAAGCCTTCCTTTCATACTTTGGTTTGGGGCTTCCCGTTACGACGCCTAGTCTTGGTCGTTTGATTTCAGACTATGC
ACAGAACGTTACAGTCAATGCTTATCTCTTCTGGATTCCATTGACTACCTTGATCCTCGTTTCCCTTGCTCTCTTTATTG
TCGGTCAAAACTTGGCGGATGCCAGCGACCCACGTACGCATAGATAG

Domains

Predicted by InterProScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-71)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

98.377

100

0.984
  amiD Streptococcus thermophilus LMG 18311

97.403

100

0.974
  amiD Streptococcus thermophilus LMD-9

97.403

100

0.974

Multiple sequence alignment