Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AAE485_RS07145 Genome accession   NZ_CP151686
Coordinates   1402316..1403827 (-) Length   503 a.a.
NCBI ID   WP_409409831.1    Uniprot ID   -
Organism   Acidithiobacillus ferriphilus strain QBS3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1397316..1408827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAE485_RS07125 (AAE485_07045) tsaB 1398972..1399646 (+) 675 WP_215849150.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -
  AAE485_RS07130 (AAE485_07050) rimI 1399643..1400113 (+) 471 WP_064220074.1 ribosomal protein S18-alanine N-acetyltransferase -
  AAE485_RS07135 (AAE485_07055) - 1400120..1401739 (+) 1620 WP_409409830.1 peptide chain release factor 3 -
  AAE485_RS07140 (AAE485_07060) - 1401764..1402207 (+) 444 WP_325799162.1 sel1 repeat family protein -
  AAE485_RS07145 (AAE485_07065) comM 1402316..1403827 (-) 1512 WP_409409831.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AAE485_RS07150 (AAE485_07070) - 1403831..1404094 (-) 264 WP_064220078.1 accessory factor UbiK family protein -
  AAE485_RS07155 (AAE485_07075) - 1404106..1405293 (-) 1188 WP_064220079.1 FAD-dependent monooxygenase -
  AAE485_RS07160 (AAE485_07080) - 1405283..1406512 (-) 1230 WP_409409832.1 FAD-dependent monooxygenase -
  AAE485_RS07165 (AAE485_07085) - 1406642..1407457 (+) 816 WP_409409833.1 TatD family hydrolase -
  AAE485_RS07170 (AAE485_07090) - 1407457..1408203 (+) 747 WP_288022915.1 tRNA threonylcarbamoyladenosine dehydratase -
  AAE485_RS07175 (AAE485_07095) - 1408311..1408703 (+) 393 WP_064220083.1 SCP2 sterol-binding domain-containing protein -

Sequence

Protein


Download         Length: 503 a.a.        Molecular weight: 53904.70 Da        Isoelectric Point: 8.2215

>NTDB_id=979822 AAE485_RS07145 WP_409409831.1 1402316..1403827(-) (comM) [Acidithiobacillus ferriphilus strain QBS3]
MPLALVHSRALTGVQAADVTVECDLGPGLPTFAVVGLAETAVKEARDRVRSAIQNSGFEFPARRMVVNLAPADLPKEGGR
FDLPMAIGILAASGQLPAAALKQLEMIGELALDGSLRPVTGTLSSTLAAGQAHRAILVPQGNAQEAAFAQSTPVFACANL
AEAVAHLRGTDRLPEVISDAKAQESAIPYPDLRDVHGQETAKRALIVAAVGGHHLLLSGPPGTGKSMLAARLPGLLPPLR
RSEALEVAAIHSLQGNGFDIRHWGRRPFRSPHHSASSAALVGGGSHPRPGEISLAHHGILFLDEMPEFPRAVLEVLREPL
ESGEIHIARAARRATFPARFQLVAAMNPCPCGHLGDPQQMCRCTPAQVSQYRNRLSGPLLDRIDIQMEVPALPVSALQEA
AQGESSAYWRERIAQAVDRQWQRQQGRNAQLQGELLAQFCALDAVGTRLLSRATETLHLSARAYHRVLRVARSIADLEGS
DPISSQHLAEAIQYRRLAQTLAR

Nucleotide


Download         Length: 1512 bp        

>NTDB_id=979822 AAE485_RS07145 WP_409409831.1 1402316..1403827(-) (comM) [Acidithiobacillus ferriphilus strain QBS3]
TTGCCGCTGGCGCTAGTCCATAGCCGCGCCCTTACCGGAGTGCAGGCGGCGGACGTCACCGTGGAATGCGATCTGGGTCC
CGGACTGCCTACCTTTGCCGTCGTCGGTCTCGCCGAAACGGCGGTCAAGGAAGCCCGTGACCGGGTGCGCTCGGCTATTC
AGAACAGTGGCTTTGAGTTCCCGGCGCGGCGTATGGTCGTCAATCTGGCCCCCGCCGACCTGCCCAAAGAAGGTGGTCGC
TTCGATCTACCCATGGCCATCGGTATTCTCGCCGCCAGCGGACAGCTGCCTGCAGCCGCACTGAAACAACTGGAGATGAT
TGGCGAACTGGCGCTGGACGGCAGCCTGCGTCCGGTAACGGGCACGCTCTCCAGCACCCTGGCAGCGGGACAAGCCCATC
GTGCCATTCTGGTGCCGCAAGGCAATGCCCAGGAAGCCGCTTTTGCTCAAAGCACCCCCGTCTTTGCCTGCGCGAATCTG
GCCGAAGCCGTCGCCCACCTACGCGGCACGGATCGTCTGCCCGAGGTCATCTCCGATGCCAAGGCCCAGGAATCCGCCAT
TCCCTACCCCGATCTGCGTGACGTACACGGTCAGGAAACGGCCAAGCGGGCGCTGATTGTCGCAGCGGTAGGCGGCCATC
ACCTGCTCCTGTCGGGGCCACCAGGCACCGGCAAAAGCATGCTGGCGGCGCGACTGCCCGGCCTACTGCCCCCTCTACGC
CGCAGCGAGGCGCTGGAAGTGGCAGCCATCCACAGCCTGCAAGGAAACGGCTTTGATATTCGCCATTGGGGTAGACGCCC
GTTCCGTAGCCCCCACCATAGTGCCTCTTCAGCGGCACTGGTGGGCGGGGGTTCGCACCCGCGTCCCGGCGAAATCAGTT
TGGCGCACCACGGCATTCTTTTTCTGGATGAAATGCCCGAGTTCCCCCGCGCGGTATTGGAAGTACTGCGGGAACCGCTG
GAGTCCGGAGAAATCCATATCGCCAGAGCGGCGCGGCGAGCCACTTTTCCGGCCCGTTTTCAGTTGGTCGCGGCAATGAA
TCCCTGTCCCTGCGGCCATCTCGGTGATCCGCAGCAGATGTGCCGCTGTACCCCGGCGCAGGTCAGCCAATACCGCAACC
GGCTCTCTGGCCCGCTGCTGGATCGCATCGACATCCAGATGGAAGTGCCCGCCCTACCGGTGAGCGCCTTACAAGAGGCG
GCACAGGGCGAAAGTTCTGCCTACTGGCGCGAACGCATAGCTCAGGCCGTTGATCGCCAGTGGCAGCGCCAGCAGGGGCG
CAACGCACAACTTCAGGGCGAACTGCTGGCGCAGTTTTGCGCCCTGGATGCGGTGGGCACCCGCCTGCTCAGCCGCGCCA
CCGAAACCCTGCATCTTTCCGCACGCGCTTACCATCGCGTGCTGCGTGTTGCCCGCAGTATCGCGGATCTGGAAGGGAGT
GATCCGATCAGTAGCCAGCATCTGGCAGAAGCCATCCAGTATCGACGTCTGGCACAGACACTGGCACGGTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-495)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.789

99.801

0.527
  comM Vibrio campbellii strain DS40M4

52.183

100

0.523
  comM Glaesserella parasuis strain SC1401

51.874

100

0.523
  comM Haemophilus influenzae Rd KW20

51.282

100

0.517
  comM Legionella pneumophila str. Paris

48.425

100

0.489
  comM Legionella pneumophila strain ERS1305867

48.425

100

0.489
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.942

100

0.459

Multiple sequence alignment