Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AAE485_RS02175 Genome accession   NZ_CP151686
Coordinates   426883..427356 (-) Length   157 a.a.
NCBI ID   WP_215849967.1    Uniprot ID   -
Organism   Acidithiobacillus ferriphilus strain QBS3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 421883..432356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAE485_RS02155 (AAE485_02130) - 423091..424038 (+) 948 WP_409409383.1 ROK family protein -
  AAE485_RS02160 (AAE485_02135) murI 424038..424886 (+) 849 WP_409409384.1 glutamate racemase -
  AAE485_RS02165 (AAE485_02140) - 424892..426184 (-) 1293 WP_409409385.1 DUF445 domain-containing protein -
  AAE485_RS02170 (AAE485_02145) - 426353..426541 (+) 189 WP_009569363.1 YqaE/Pmp3 family membrane protein -
  AAE485_RS02175 (AAE485_02150) ssb 426883..427356 (-) 474 WP_215849967.1 single-stranded DNA-binding protein Machinery gene
  AAE485_RS02180 (AAE485_02155) uvrA 427443..430247 (+) 2805 WP_409409386.1 excinuclease ABC subunit UvrA -
  AAE485_RS02185 (AAE485_02160) - 430312..430866 (+) 555 WP_409409387.1 hypothetical protein -
  AAE485_RS02190 (AAE485_02165) trxA 430980..431849 (+) 870 WP_409409388.1 thioredoxin -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17008.78 Da        Isoelectric Point: 5.0792

>NTDB_id=979815 AAE485_RS02175 WP_215849967.1 426883..427356(-) (ssb) [Acidithiobacillus ferriphilus strain QBS3]
MAGVNKVILLGHLGRDPEMRYQPSGGAIANFSIATSETFKDKEGNKQERTEWHRVVLFGRTAEIAGEYLRKGSMAYVEGR
LQTRKWTDKEGQERYTTEIVGDRLQLVGARGGGGGGAASFDEEDQSRPSGGGSSAGGARKNEMPPAPAEDFDDDIPF

Nucleotide


Download         Length: 474 bp        

>NTDB_id=979815 AAE485_RS02175 WP_215849967.1 426883..427356(-) (ssb) [Acidithiobacillus ferriphilus strain QBS3]
ATGGCGGGAGTGAACAAGGTCATATTGTTGGGGCATCTGGGACGGGACCCGGAGATGCGTTATCAGCCCAGTGGCGGCGC
CATCGCGAACTTCAGCATCGCGACTTCCGAGACTTTCAAGGACAAGGAAGGCAACAAGCAGGAGCGCACGGAATGGCATC
GGGTGGTGCTCTTCGGACGCACCGCGGAAATCGCCGGCGAATACCTGCGCAAGGGCAGCATGGCTTATGTGGAAGGCCGC
CTGCAGACGCGCAAGTGGACCGACAAGGAAGGGCAGGAGCGCTACACCACGGAGATCGTGGGAGACCGTCTGCAACTGGT
GGGCGCGCGTGGGGGCGGTGGCGGTGGTGCGGCCAGCTTCGATGAGGAAGATCAGTCCCGGCCGAGTGGCGGCGGCAGCA
GTGCCGGGGGCGCGCGGAAGAATGAGATGCCGCCCGCGCCGGCGGAGGATTTTGATGATGATATTCCCTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.889

100

0.561
  ssb Vibrio cholerae strain A1552

49.711

100

0.548
  ssb Neisseria gonorrhoeae MS11

45.665

100

0.503
  ssb Neisseria meningitidis MC58

45.349

100

0.497
  ssbA Bacillus subtilis subsp. subtilis str. 168

33.526

100

0.369

Multiple sequence alignment