Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   AADZ70_RS07555 Genome accession   NZ_CP151679
Coordinates   1540080..1541150 (-) Length   356 a.a.
NCBI ID   WP_045926720.1    Uniprot ID   A0AAI8HN13
Organism   Bacillus sp. YBsi01     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1535080..1546150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AADZ70_RS07505 (AADZ70_07505) - 1535140..1535724 (-) 585 WP_016938975.1 signal peptidase I -
  AADZ70_RS07510 (AADZ70_07510) tapA 1535696..1536367 (-) 672 WP_029575370.1 amyloid fiber anchoring/assembly protein TapA -
  AADZ70_RS07515 (AADZ70_07515) - 1536626..1536955 (+) 330 WP_016938972.1 DUF3889 domain-containing protein -
  AADZ70_RS07520 (AADZ70_07520) - 1536995..1537174 (-) 180 WP_016938971.1 YqzE family protein -
  AADZ70_RS07525 (AADZ70_07525) comGG 1537231..1537608 (-) 378 WP_342007946.1 competence type IV pilus minor pilin ComGG -
  AADZ70_RS07530 (AADZ70_07530) comGF 1537609..1538106 (-) 498 WP_342007947.1 competence type IV pilus minor pilin ComGF -
  AADZ70_RS07535 (AADZ70_07535) comGE 1538018..1538332 (-) 315 WP_045926718.1 competence type IV pilus minor pilin ComGE Machinery gene
  AADZ70_RS07540 (AADZ70_07540) comGD 1538316..1538753 (-) 438 WP_045926719.1 competence type IV pilus minor pilin ComGD Machinery gene
  AADZ70_RS07545 (AADZ70_07545) comGC 1538743..1539009 (-) 267 WP_045926801.1 competence type IV pilus major pilin ComGC Machinery gene
  AADZ70_RS07550 (AADZ70_07550) comGB 1539056..1540093 (-) 1038 WP_342007948.1 competence type IV pilus assembly protein ComGB Machinery gene
  AADZ70_RS07555 (AADZ70_07555) comGA 1540080..1541150 (-) 1071 WP_045926720.1 competence type IV pilus ATPase ComGA Machinery gene
  AADZ70_RS07560 (AADZ70_07560) - 1541343..1542293 (-) 951 WP_049627017.1 magnesium transporter CorA family protein -
  AADZ70_RS07565 (AADZ70_07565) - 1542441..1543742 (+) 1302 WP_188154561.1 hemolysin family protein -
  AADZ70_RS07570 (AADZ70_07570) - 1543780..1544610 (-) 831 WP_188154562.1 STAS domain-containing protein -
  AADZ70_RS07580 (AADZ70_07580) - 1544819..1545199 (-) 381 WP_016938960.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  AADZ70_RS07585 (AADZ70_07585) - 1545436..1545681 (+) 246 WP_003153078.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40409.64 Da        Isoelectric Point: 9.2036

>NTDB_id=979685 AADZ70_RS07555 WP_045926720.1 1540080..1541150(-) (comGA) [Bacillus sp. YBsi01]
MENIETYSRNIINEAYTARASDIHIVPRERDAFIHFRIGHALVKKRVLKKEECVRLISHFKFLSAMDIGERRKPQNGSLS
LPLPSETVHLRMSTLPTMNDESLVIRLLPKRQIPPLDKLSLFPGAGAALLSFLKHSHGLILFTGPTGSGKTTTLYSLVNY
AKRHFNRRIVTLEDPVETRDEDVLQVQVNEKAGVTYSAGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLSSLH
TRDAKGAIYRLLEFGVNMTEIEQTVIAIAAQRLVDLTCPFCKAENCSVYCRLYRQTRRAGIYELLYGKNLTQCFQEAKGE
HANFQYQTLRRLIRKGIALGYVTTDNYDRWVYHEAD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=979685 AADZ70_RS07555 WP_045926720.1 1540080..1541150(-) (comGA) [Bacillus sp. YBsi01]
ATGGAGAATATAGAAACATACAGCAGGAACATTATAAACGAGGCCTATACGGCAAGAGCTTCAGATATACACATCGTGCC
GCGTGAAAGGGATGCTTTCATTCATTTTCGCATTGGTCATGCTCTTGTGAAAAAAAGAGTTTTAAAAAAAGAGGAATGCG
TAAGGCTTATTTCTCATTTTAAGTTTTTATCGGCGATGGATATAGGAGAAAGACGAAAGCCGCAAAACGGATCATTGTCT
CTGCCGCTTCCATCTGAAACCGTTCATTTAAGGATGTCAACCTTACCGACAATGAATGATGAAAGTCTTGTCATCAGGCT
TTTGCCTAAGCGGCAGATTCCCCCTCTGGATAAACTGTCCTTATTCCCGGGGGCAGGCGCCGCACTCTTGTCCTTTCTGA
AGCATTCCCACGGCCTGATTCTTTTTACCGGTCCGACCGGATCTGGAAAAACGACCACTCTCTACTCGCTTGTCAATTAT
GCAAAACGTCATTTTAACCGGCGGATTGTCACGCTTGAAGATCCCGTAGAAACGAGAGATGAAGATGTTTTACAAGTTCA
GGTGAATGAAAAAGCCGGAGTCACATACTCCGCCGGTTTAAAAGCGATTTTAAGACATGACCCCGATATGATCATCTTAG
GGGAAATCAGGGATGCCGAGACGGCTGAAATCGCAGTCCGCGCGGCTATGACGGGGCATCTTGTTCTTTCAAGCTTGCAT
ACAAGAGATGCTAAGGGCGCTATATACAGGCTGCTGGAGTTTGGGGTGAACATGACGGAAATTGAACAAACCGTTATTGC
CATTGCCGCTCAGCGTCTGGTTGATTTAACGTGTCCGTTTTGCAAAGCGGAAAACTGTTCCGTGTACTGCCGGCTGTACA
GGCAGACGCGCCGTGCGGGAATCTATGAACTGCTTTACGGGAAAAATCTCACCCAATGCTTTCAGGAAGCAAAAGGAGAG
CACGCCAATTTTCAATATCAGACGCTCCGCAGGCTGATCCGAAAAGGAATCGCGCTCGGCTATGTCACGACTGACAACTA
CGATCGGTGGGTGTATCATGAAGCGGATTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

82.303

100

0.823
  pilB Glaesserella parasuis strain SC1401

38.793

97.753

0.379

Multiple sequence alignment