Detailed information NTG0979682

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACNHKS_RS16915
• Genome accession: NZ_CP182145
• Coordinates: 3453174..3454166 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain CUWW10
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3448174..3459166

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACNHKS_RS16895 (ACNHKS_16895)	otnK	3448949..3450211 (+)	1263	WP_000590403.1	3-oxo-tetronate kinase	-
ACNHKS_RS16900 (ACNHKS_16900)	ygbL	3450208..3450846 (+)	639	WP_001278994.1	aldolase	-
ACNHKS_RS16905 (ACNHKS_16905)	ygbM	3450851..3451627 (+)	777	WP_001136934.1	HPr family phosphocarrier protein	-
ACNHKS_RS16910 (ACNHKS_16910)	ygbN	3451716..3453080 (+)	1365	WP_000104441.1	GntP family transporter	-
ACNHKS_RS16915 (ACNHKS_16915)	rpoS	3453174..3454166 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ACNHKS_RS16920 (ACNHKS_16920)	nlpD	3454229..3455323 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
ACNHKS_RS16925 (ACNHKS_16925)	pcm	3455508..3456134 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ACNHKS_RS16930 (ACNHKS_16930)	surE	3456128..3456889 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ACNHKS_RS16935 (ACNHKS_16935)	truD	3456870..3457919 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
ACNHKS_RS16940 (ACNHKS_16940)	ispF	3457916..3458395 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACNHKS_RS16945 (ACNHKS_16945)	ispD	3458395..3459105 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=979682 ACNHKS_RS16915 WP_000081550.1 3453174..3454166(-) (rpoS) [Escherichia coli strain CUWW10]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=979682 ACNHKS_RS16915 WP_000081550.1 3453174..3454166(-) (rpoS) [Escherichia coli strain CUWW10]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715