Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AAC977_RS13800 Genome accession   NZ_CP151640
Coordinates   3070114..3070650 (+) Length   178 a.a.
NCBI ID   WP_072958012.1    Uniprot ID   A0A1M4ZW81
Organism   Vibrio gazogenes strain DSM 21264     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3065114..3075650
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAC977_RS13785 (AAC977_13730) uvrA 3065228..3068050 (-) 2823 WP_072958019.1 excinuclease ABC subunit UvrA -
  AAC977_RS13790 (AAC977_13735) galU 3068189..3069076 (-) 888 WP_072958017.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  AAC977_RS13795 (AAC977_13740) qstR 3069194..3069841 (-) 648 WP_072958014.1 response regulator transcription factor Regulator
  AAC977_RS13800 (AAC977_13745) ssb 3070114..3070650 (+) 537 WP_072958012.1 single-stranded DNA-binding protein Machinery gene
  AAC977_RS13805 (AAC977_13750) metH 3070747..3074421 (-) 3675 WP_072958010.1 methionine synthase -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19752.74 Da        Isoelectric Point: 5.2252

>NTDB_id=979433 AAC977_RS13800 WP_072958012.1 3070114..3070650(+) (ssb) [Vibrio gazogenes strain DSM 21264]
MASRGVNKVILVGNLGSDPEVRYMPSGGAVANITIATSETWRDKTTGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQERYTTEVVVQGFNGVMQMLGGRQGSGGQTQSQPGMQAQQQNSGWGQPQQPQSQAAHQQQPQQQST
PQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=979433 AAC977_RS13800 WP_072958012.1 3070114..3070650(+) (ssb) [Vibrio gazogenes strain DSM 21264]
ATGGCAAGCCGTGGAGTAAACAAAGTTATATTAGTTGGGAACCTTGGAAGTGATCCTGAAGTTCGTTACATGCCAAGTGG
CGGTGCAGTTGCGAACATCACGATTGCAACATCGGAAACATGGCGCGATAAGACAACGGGTGAGCAAAGAGAAAAAACCG
AGTGGCACCGTGTCGCCCTGTTCGGAAAGTTGGCAGAAGTCGCAGGAGAATACCTACGCAAAGGTTCTCAGGTATATATT
GAAGGACAGCTGCAAACGCGGAAATGGCAGGATCAAAGCGGTCAGGAGCGTTATACAACTGAAGTTGTTGTTCAAGGGTT
TAACGGTGTGATGCAAATGCTAGGTGGTCGCCAAGGCTCTGGTGGTCAAACGCAGTCTCAGCCGGGGATGCAAGCTCAAC
AACAAAACAGTGGATGGGGACAGCCTCAACAGCCGCAATCACAAGCAGCGCATCAGCAGCAACCTCAGCAACAATCGACA
CCACAACCACAATACAATGAACCACCAATGGATTTCGATGACGATATTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1M4ZW81

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

79.67

100

0.815
  ssb Glaesserella parasuis strain SC1401

54.054

100

0.562
  ssb Neisseria meningitidis MC58

47.027

100

0.489
  ssb Neisseria gonorrhoeae MS11

46.111

100

0.466

Multiple sequence alignment