Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   AAC977_RS13795 Genome accession   NZ_CP151640
Coordinates   3069194..3069841 (-) Length   215 a.a.
NCBI ID   WP_072958014.1    Uniprot ID   A0A1M4ZV84
Organism   Vibrio gazogenes strain DSM 21264     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3064194..3074841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAC977_RS13785 (AAC977_13730) uvrA 3065228..3068050 (-) 2823 WP_072958019.1 excinuclease ABC subunit UvrA -
  AAC977_RS13790 (AAC977_13735) galU 3068189..3069076 (-) 888 WP_072958017.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  AAC977_RS13795 (AAC977_13740) qstR 3069194..3069841 (-) 648 WP_072958014.1 response regulator transcription factor Regulator
  AAC977_RS13800 (AAC977_13745) ssb 3070114..3070650 (+) 537 WP_072958012.1 single-stranded DNA-binding protein Machinery gene
  AAC977_RS13805 (AAC977_13750) metH 3070747..3074421 (-) 3675 WP_072958010.1 methionine synthase -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 25129.12 Da        Isoelectric Point: 9.4355

>NTDB_id=979432 AAC977_RS13795 WP_072958014.1 3069194..3069841(-) (qstR) [Vibrio gazogenes strain DSM 21264]
MKRSNYSRVLYVLYPDNQEPSTLYHEIEVALGQILPKIQPRQFMLSHQTDRHKILLFDYQQKEVLLSRLNMDDALDLCLE
TVVINVEKRPRTEELLQLGNLKGLFYRSDPIELIIAALREIREGQIYLPRHICGQLLHYYRHLFNNKNVSAAISLTSREL
EILRCLKTGASNTQIADNLFISEFTVKSHLYQIFKKISVKNRTQATTWAKQNLVS

Nucleotide


Download         Length: 648 bp        

>NTDB_id=979432 AAC977_RS13795 WP_072958014.1 3069194..3069841(-) (qstR) [Vibrio gazogenes strain DSM 21264]
ATGAAAAGATCAAATTACAGCAGAGTGCTTTATGTCCTCTATCCCGATAATCAAGAACCCTCAACGCTCTATCATGAAAT
CGAGGTCGCACTAGGACAGATACTCCCCAAAATTCAACCCCGGCAATTTATGCTGTCTCATCAGACCGATCGGCACAAAA
TACTCCTGTTTGATTATCAACAAAAAGAAGTATTGCTATCCCGCTTGAATATGGATGACGCACTGGATTTGTGCCTCGAA
ACCGTAGTTATCAATGTTGAGAAGCGCCCGAGAACAGAAGAGCTTCTCCAGCTCGGTAATTTGAAAGGGCTGTTTTATCG
TAGTGATCCGATTGAATTGATCATTGCTGCGTTGCGCGAAATCCGAGAGGGGCAAATTTATTTACCGCGACATATTTGTG
GCCAGCTTCTTCATTACTATCGCCATTTATTTAACAATAAAAATGTCAGTGCGGCGATATCTTTGACGTCTAGAGAGTTG
GAAATCCTGCGTTGTCTGAAAACGGGGGCATCGAACACACAAATTGCAGATAATCTGTTTATCAGTGAATTTACGGTCAA
ATCACATTTGTATCAGATTTTTAAGAAAATCTCTGTGAAAAACCGCACTCAAGCCACAACATGGGCAAAACAGAATCTAG
TCTCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1M4ZV84

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

50.23

100

0.507
  qstR Vibrio campbellii strain DS40M4

46.759

100

0.47
  qstR Vibrio parahaemolyticus RIMD 2210633

45.413

100

0.46

Multiple sequence alignment