Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   AAC977_RS05960 Genome accession   NZ_CP151640
Coordinates   1295425..1295730 (+) Length   101 a.a.
NCBI ID   WP_072960937.1    Uniprot ID   A0A1M5DRD8
Organism   Vibrio gazogenes strain DSM 21264     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1290425..1300730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAC977_RS05950 (AAC977_05915) - 1292914..1293186 (+) 273 WP_021020075.1 HU family DNA-binding protein -
  AAC977_RS05955 (AAC977_05920) ppiD 1293436..1295289 (+) 1854 WP_072960935.1 peptidylprolyl isomerase -
  AAC977_RS05960 (AAC977_05925) comEA 1295425..1295730 (+) 306 WP_072960937.1 helix-hairpin-helix domain-containing protein Machinery gene
  AAC977_RS05965 (AAC977_05930) - 1295813..1298212 (-) 2400 WP_083571272.1 hybrid sensor histidine kinase/response regulator -
  AAC977_RS05970 (AAC977_05935) - 1298378..1299538 (-) 1161 WP_072960943.1 acyl-homoserine-lactone synthase -
  AAC977_RS05975 (AAC977_05940) cmk 1299794..1300477 (+) 684 WP_072960945.1 (d)CMP kinase -

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 10783.50 Da        Isoelectric Point: 5.0201

>NTDB_id=979421 AAC977_RS05960 WP_072960937.1 1295425..1295730(+) (comEA) [Vibrio gazogenes strain DSM 21264]
MFKLLLLSVLSILCLPLQTAYAATDEPASAALLESPVNTVNINSATAEELATTLSGIGLKKAQALVNYREEHGPFTQIED
VTAVKGIGMSLVERNRSRIAL

Nucleotide


Download         Length: 306 bp        

>NTDB_id=979421 AAC977_RS05960 WP_072960937.1 1295425..1295730(+) (comEA) [Vibrio gazogenes strain DSM 21264]
ATGTTTAAACTATTACTTCTTTCTGTACTTTCAATCCTGTGTCTGCCATTACAAACGGCTTATGCAGCAACAGATGAGCC
TGCCTCTGCTGCACTTTTGGAGAGTCCGGTCAATACCGTCAATATTAACAGTGCAACCGCGGAAGAGCTTGCCACAACGC
TCAGCGGTATTGGTTTGAAAAAAGCGCAGGCTCTCGTTAACTATAGAGAAGAACATGGCCCATTTACTCAGATAGAGGAT
GTTACAGCAGTCAAGGGGATTGGTATGTCGCTTGTCGAGAGGAACCGTAGCCGAATTGCCTTATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(38-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1M5DRD8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

60

89.109

0.535
  comEA Vibrio cholerae strain A1552

60

89.109

0.535
  comE1/comEA Haemophilus influenzae Rd KW20

39.64

100

0.436
  comEA Vibrio campbellii strain DS40M4

49.438

88.119

0.436
  comEA Vibrio parahaemolyticus RIMD 2210633

60.317

62.376

0.376

Multiple sequence alignment