Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AAEO47_RS20625 Genome accession   NZ_CP151543
Coordinates   4473907..4475400 (-) Length   497 a.a.
NCBI ID   WP_009878288.1    Uniprot ID   A0A367M9V8
Organism   Pseudomonas aeruginosa strain HN232     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4468907..4480400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAEO47_RS20610 (AAEO47_20610) - 4469637..4470554 (+) 918 WP_003098255.1 LysR substrate-binding domain-containing protein -
  AAEO47_RS20615 (AAEO47_20615) pchP 4470705..4471754 (+) 1050 WP_034053047.1 phosphorylcholine phosphatase -
  AAEO47_RS20620 (AAEO47_20620) betT 4471797..4473782 (-) 1986 WP_003096496.1 choline BCCT transporter BetT -
  AAEO47_RS20625 (AAEO47_20625) comM 4473907..4475400 (-) 1494 WP_009878288.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AAEO47_RS20630 (AAEO47_20630) - 4475441..4475701 (-) 261 WP_003096478.1 accessory factor UbiK family protein -
  AAEO47_RS20635 (AAEO47_20635) glnK 4476141..4476479 (+) 339 WP_003096476.1 P-II family nitrogen regulator -
  AAEO47_RS20640 (AAEO47_20640) - 4476519..4477847 (+) 1329 WP_003109815.1 ammonium transporter -
  AAEO47_RS20645 (AAEO47_20645) - 4478108..4478533 (+) 426 WP_003096441.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  AAEO47_RS20650 (AAEO47_20650) sutA 4478611..4478928 (+) 318 WP_003098240.1 transcriptional regulator SutA -
  AAEO47_RS20655 (AAEO47_20655) - 4479352..4480266 (+) 915 WP_003163071.1 fimbrial protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53066.98 Da        Isoelectric Point: 7.9587

>NTDB_id=979067 AAEO47_RS20625 WP_009878288.1 4473907..4475400(-) (comM) [Pseudomonas aeruginosa strain HN232]
MSLAIVHSRAQVGVEAPCVSVEAHLANGLPSLTLVGLPETAVRESKDRVRSALLNAGFDFPARRITLNLAPADLPKDGGR
FDLAIALGILAASGQLPGTALDGLECLGELALSGAIRPVRGVLPAALAARDARRVLVVPKENAEEASLASGLTVFAVDHL
LEIAGHLSGQAPLPPYQARGLLRAPFPYPDLAEVQGQAAAKRALLVAAAGAHNLLLSGPPGTGKTLLASRLPGLLPALDE
DEALEVAAIHSVASHVPLRHWPQRPFRQPHHSASAPALVGGGSRPQPGEITLAHQGVLFLDELPEFERKVLEVLREPLES
GEIVIARANGRVRFPARFQLVAAMNPCPCGYLGDPSGRCRCTPEQVQRYRGKLSGPLLDRIDLHVSVLRESTSLQPGHGE
TATAEISERVGAARQRQLARQGCANAHLDLQAMHRNCALAEADRRWLEAAGERLELSLRALHRILKVARTLADLERIDAI
ERRHLAEALQYRATTST

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=979067 AAEO47_RS20625 WP_009878288.1 4473907..4475400(-) (comM) [Pseudomonas aeruginosa strain HN232]
ATGTCCCTGGCGATTGTCCACAGCCGAGCCCAGGTCGGCGTCGAAGCCCCCTGCGTCAGCGTCGAGGCGCACCTGGCCAA
CGGCCTGCCTTCGCTGACCCTGGTCGGCCTGCCGGAAACCGCGGTGCGCGAGAGCAAGGACCGCGTGCGCAGCGCCCTGC
TCAATGCCGGTTTCGACTTCCCCGCGCGGCGCATCACCCTCAACCTCGCCCCCGCCGACCTACCCAAGGACGGCGGTCGC
TTCGACCTGGCCATCGCACTCGGCATCCTCGCCGCCAGCGGCCAGTTGCCCGGCACCGCCCTCGACGGCCTGGAGTGCCT
CGGCGAACTGGCCCTGTCCGGGGCGATCCGGCCAGTGCGAGGCGTATTGCCGGCCGCGCTGGCGGCGCGCGACGCAAGGC
GCGTTCTGGTGGTACCGAAGGAAAATGCCGAAGAGGCCAGCCTGGCCAGCGGGCTGACGGTGTTCGCCGTGGACCACCTG
CTGGAGATCGCCGGACACCTCTCCGGCCAGGCCCCGCTGCCGCCCTACCAGGCCCGCGGCCTGCTCCGCGCGCCCTTCCC
TTATCCAGACCTGGCCGAGGTCCAGGGCCAGGCCGCCGCCAAGCGCGCCCTGCTGGTGGCCGCCGCCGGCGCGCACAACC
TGTTGCTCAGCGGCCCGCCGGGCACCGGCAAGACCCTCCTGGCCAGCCGCCTGCCCGGCCTGCTGCCGGCGCTCGACGAG
GACGAAGCCCTGGAGGTCGCGGCGATCCATTCGGTGGCCAGCCACGTCCCCCTCAGGCACTGGCCGCAGCGACCGTTCCG
CCAGCCGCACCACTCCGCCTCCGCGCCGGCCCTGGTCGGCGGCGGCAGCCGCCCGCAGCCGGGCGAGATCACCCTGGCGC
ACCAGGGCGTGCTGTTCCTCGACGAACTGCCGGAGTTCGAGCGCAAGGTCCTGGAGGTCCTGCGCGAGCCGCTGGAAAGC
GGCGAGATCGTCATTGCCCGGGCCAACGGCCGGGTACGTTTCCCGGCGCGCTTCCAACTGGTGGCGGCGATGAATCCCTG
TCCCTGTGGCTACCTCGGCGATCCCAGCGGCCGCTGCCGCTGCACCCCGGAACAGGTCCAGCGCTACCGGGGCAAGCTGT
CCGGACCGCTGCTCGATCGCATCGACCTGCACGTCAGCGTGCTCCGCGAAAGCACCAGCCTGCAGCCAGGACACGGCGAA
ACCGCTACCGCCGAGATCAGCGAACGGGTTGGCGCCGCACGGCAACGGCAACTGGCCCGCCAGGGCTGCGCCAATGCCCA
TCTCGACCTCCAGGCGATGCACCGCAATTGTGCACTCGCCGAAGCGGACCGCCGCTGGCTGGAGGCTGCCGGAGAGCGCC
TGGAACTTTCCTTGCGCGCCTTGCATCGCATACTCAAGGTGGCCCGGACGCTGGCCGACCTGGAGCGCATCGATGCCATC
GAACGCCGGCACCTGGCGGAAGCCCTGCAGTATCGGGCAACGACCTCCACGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A367M9V8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

56.452

99.799

0.563
  comM Haemophilus influenzae Rd KW20

55.01

100

0.563
  comM Vibrio cholerae strain A1552

56.048

99.799

0.559
  comM Glaesserella parasuis strain SC1401

55.09

100

0.555
  comM Legionella pneumophila str. Paris

50.301

100

0.505
  comM Legionella pneumophila strain ERS1305867

50.301

100

0.505
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.154

100

0.471

Multiple sequence alignment