Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AADZ52_RS00215 Genome accession   NZ_CP151430
Coordinates   39907..40440 (+) Length   177 a.a.
NCBI ID   WP_011700912.1    Uniprot ID   A0A7X0T435
Organism   Listeria welshimeri strain 4-43     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 34907..45440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AADZ52_RS00185 (AADZ52_00185) - 35277..36041 (-) 765 WP_185307493.1 hypothetical protein -
  AADZ52_RS00190 (AADZ52_00190) - 36114..36563 (-) 450 WP_185308216.1 DUF2712 domain-containing protein -
  AADZ52_RS00195 (AADZ52_00195) - 36780..37118 (+) 339 WP_011700909.1 DUF4064 domain-containing protein -
  AADZ52_RS00200 (AADZ52_00200) - 37308..37967 (+) 660 WP_011700910.1 DedA family protein -
  AADZ52_RS00205 (AADZ52_00205) arcA 38046..39275 (+) 1230 WP_097350516.1 arginine deiminase -
  AADZ52_RS00210 (AADZ52_00210) rpsF 39558..39851 (+) 294 WP_003718123.1 30S ribosomal protein S6 -
  AADZ52_RS00215 (AADZ52_00215) ssbA 39907..40440 (+) 534 WP_011700912.1 single-stranded DNA-binding protein Machinery gene
  AADZ52_RS00220 (AADZ52_00220) rpsR 40484..40723 (+) 240 WP_003721669.1 30S ribosomal protein S18 -
  AADZ52_RS00225 (AADZ52_00225) - 40877..41491 (+) 615 WP_185304643.1 PepSY domain-containing protein -
  AADZ52_RS00230 (AADZ52_00230) - 41748..42362 (+) 615 WP_011700914.1 accessory gene regulator ArgB-like protein -
  AADZ52_RS00235 (AADZ52_00235) - 42346..42507 (+) 162 WP_011700915.1 cyclic lactone autoinducer peptide -
  AADZ52_RS00240 (AADZ52_00240) - 42603..43898 (+) 1296 WP_097350518.1 sensor histidine kinase -
  AADZ52_RS00245 (AADZ52_00245) - 43917..44645 (+) 729 WP_011700917.1 LytTR family DNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19288.91 Da        Isoelectric Point: 4.7306

>NTDB_id=976571 AADZ52_RS00215 WP_011700912.1 39907..40440(+) (ssbA) [Listeria welshimeri strain 4-43]
MMNRVVLVGRLTKDPELRYTPAGVAVATFTLAVNRTFTNQQGEREADFINCVVWRKPAENVANFLKKGSMAGVDGRVQTR
NYEGNDGKRVYVTEIVAESVQFLEPRNSNGGGGNNYQGGNNNNYNNGGSNSGQAPTNNGGFGQDQQQSQNQNYQSTNNDP
FASDGKPIDISDDDLPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=976571 AADZ52_RS00215 WP_011700912.1 39907..40440(+) (ssbA) [Listeria welshimeri strain 4-43]
ATGATGAATCGTGTAGTACTTGTAGGACGCTTAACAAAAGATCCTGAATTACGTTACACTCCGGCTGGCGTGGCTGTTGC
GACTTTTACATTAGCTGTAAATCGTACGTTCACTAACCAACAGGGAGAGCGAGAAGCTGACTTTATTAATTGTGTTGTTT
GGCGTAAACCAGCAGAAAACGTTGCTAATTTCCTTAAGAAAGGAAGCATGGCAGGCGTTGATGGCCGCGTTCAAACTCGT
AATTACGAGGGTAACGATGGTAAACGAGTTTATGTGACAGAAATTGTAGCTGAGAGTGTTCAATTCCTTGAACCGCGTAA
TTCTAATGGCGGCGGCGGAAATAACTATCAAGGCGGAAACAATAATAATTATAATAATGGTGGAAGTAACTCCGGGCAAG
CACCTACAAATAACGGTGGATTCGGACAGGACCAGCAACAATCTCAAAATCAAAATTATCAATCCACTAACAATGATCCT
TTCGCTAGTGATGGTAAGCCAATCGACATTTCAGATGACGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7X0T435

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

67.797

100

0.678
  ssb Latilactobacillus sakei subsp. sakei 23K

56.742

100

0.571
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.321

59.887

0.367
  ssb Vibrio cholerae strain A1552

35.135

100

0.367
  ssb Glaesserella parasuis strain SC1401

34.946

100

0.367

Multiple sequence alignment