Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AADV58_RS01240 Genome accession   NZ_CP151406
Coordinates   256578..258065 (+) Length   495 a.a.
NCBI ID   WP_028993980.1    Uniprot ID   -
Organism   Azonexus hydrophilus strain NCP973     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 251578..263065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AADV58_RS01210 (AADV58_01210) purU 251961..252824 (+) 864 WP_028993986.1 formyltetrahydrofolate deformylase -
  AADV58_RS01215 (AADV58_01215) - 252824..253366 (+) 543 WP_028993985.1 hydrolase -
  AADV58_RS01220 (AADV58_01220) amt 253473..254864 (-) 1392 WP_028993984.1 ammonium transporter -
  AADV58_RS01225 (AADV58_01225) glnK 254876..255214 (-) 339 WP_028993983.1 P-II family nitrogen regulator -
  AADV58_RS01230 (AADV58_01230) - 255287..256078 (-) 792 WP_028993982.1 TorF family putative porin -
  AADV58_RS01235 (AADV58_01235) - 256326..256571 (+) 246 WP_028993981.1 accessory factor UbiK family protein -
  AADV58_RS01240 (AADV58_01240) comM 256578..258065 (+) 1488 WP_028993980.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AADV58_RS01245 (AADV58_01245) - 258070..259269 (+) 1200 WP_341743851.1 multidrug effflux MFS transporter -
  AADV58_RS01250 (AADV58_01250) - 259249..259641 (-) 393 WP_341743852.1 rhodanese-like domain-containing protein -
  AADV58_RS01255 (AADV58_01255) - 259725..260207 (+) 483 WP_341743853.1 hypothetical protein -
  AADV58_RS01260 (AADV58_01260) mobA 260204..260791 (-) 588 WP_341744522.1 molybdenum cofactor guanylyltransferase MobA -
  AADV58_RS01265 (AADV58_01265) - 260791..261156 (-) 366 WP_341743854.1 DsrE family protein -
  AADV58_RS01270 (AADV58_01270) - 261149..261583 (-) 435 WP_341743855.1 glycine cleavage system protein H -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 52479.21 Da        Isoelectric Point: 7.9340

>NTDB_id=976431 AADV58_RS01240 WP_028993980.1 256578..258065(+) (comM) [Azonexus hydrophilus strain NCP973]
MALAVALSRGLDGLNAPPVTVEVHLANGLPGLTLVGLPDTEVREARDRVRAAIVNSGFEYPARRITVNLAPADLPKESGR
FDLPIALGILAASGQIPGKKLAAHEFAGELSLSGELRPVRGALAMALNAAGDGKTFILPHDSACEAVLTGQDNILAAGSL
LAVCAHLAGESPLQPPPLPERSNPIHYPDLAEVRGQVQARRALEIAAAGKHSLLMLGPPGAGKSMLAARLPGLMPPLDDA
AARASAAVLSLVGQFDPTRYGQRVFRSPHHTASAAALVGGGNPPRPGEISLAHEGILFLDELPEFDRKVLETLREPLETG
RVHISRAARHADYPAEFQLIAAMNPCPCGYHGEKRCLCTAEQVARYRGKLSGPFVDRIDLVIEVPALPPESLAGRPDGES
SASVRERVALAWARQRERQGKANARLNTREIDALCQADTAGSALLQQAAQRLGLSARAWHRVLKVARTIADLGDCAIIGA
PHIAEAIQYRRFARD

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=976431 AADV58_RS01240 WP_028993980.1 256578..258065(+) (comM) [Azonexus hydrophilus strain NCP973]
ATGGCACTGGCCGTTGCGCTGAGCCGGGGACTGGACGGACTCAACGCGCCGCCGGTCACCGTCGAGGTGCACCTGGCCAA
CGGCCTGCCCGGACTGACCCTGGTCGGTCTGCCCGATACCGAAGTGCGCGAGGCGCGCGACCGGGTACGCGCCGCCATCG
TCAATTCCGGCTTCGAATACCCGGCCCGGCGGATTACCGTGAATCTCGCACCGGCCGACCTGCCCAAGGAGTCCGGACGT
TTCGACCTGCCGATCGCACTCGGAATCCTCGCTGCCAGCGGCCAGATTCCGGGTAAAAAACTGGCTGCCCATGAATTTGC
CGGCGAGTTGTCACTGTCCGGCGAACTGCGCCCGGTACGCGGCGCCCTGGCCATGGCACTGAACGCTGCCGGCGACGGCA
AGACCTTCATCCTGCCCCACGATAGCGCCTGCGAAGCGGTGCTCACCGGCCAGGACAACATTCTGGCCGCCGGCTCGCTG
CTCGCCGTCTGCGCCCATCTGGCCGGCGAAAGCCCATTGCAGCCCCCGCCGCTGCCGGAACGCAGCAACCCCATCCACTA
TCCCGATCTGGCCGAGGTGCGGGGTCAGGTACAGGCGCGGCGGGCGCTGGAAATCGCCGCCGCCGGCAAGCATTCACTGC
TGATGCTGGGACCGCCAGGGGCCGGCAAGTCGATGCTCGCCGCCCGCTTGCCGGGCCTGATGCCGCCGCTCGACGACGCC
GCCGCGCGCGCTTCGGCGGCCGTCCTGTCGCTGGTCGGCCAGTTCGATCCGACCCGCTACGGCCAGCGCGTCTTCCGCAG
CCCGCACCACACCGCCTCGGCGGCAGCGCTGGTCGGCGGCGGCAATCCGCCGCGCCCGGGCGAGATCAGCCTGGCCCACG
AGGGCATCCTGTTTCTCGACGAATTGCCCGAATTCGACCGCAAGGTGCTGGAAACCCTGCGCGAACCGCTGGAAACCGGG
CGCGTGCACATTTCCCGCGCCGCCCGCCATGCCGATTACCCGGCCGAGTTTCAGTTGATCGCGGCGATGAACCCTTGTCC
CTGTGGCTACCACGGCGAAAAACGCTGCTTGTGTACAGCGGAGCAAGTTGCCCGCTACCGCGGCAAACTCTCCGGCCCCT
TCGTCGACCGCATCGACCTGGTCATCGAAGTCCCGGCTTTGCCGCCCGAATCGCTGGCCGGACGCCCGGACGGCGAATCC
TCGGCCAGTGTGCGTGAGCGCGTCGCACTGGCCTGGGCGCGCCAGCGCGAGCGCCAGGGTAAGGCCAACGCCCGTCTCAA
CACCCGCGAAATCGATGCCCTGTGCCAGGCCGACACCGCCGGCAGCGCCCTGCTGCAACAGGCCGCCCAGCGCCTCGGCC
TGTCGGCGCGCGCCTGGCACCGCGTACTCAAGGTCGCACGCACCATCGCCGACCTCGGCGATTGCGCTATCATCGGCGCA
CCCCACATTGCCGAAGCCATCCAGTACCGCCGCTTCGCCCGCGACTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(398-490)

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.509

100

0.549
  comM Vibrio campbellii strain DS40M4

53.119

100

0.533
  comM Glaesserella parasuis strain SC1401

51.389

100

0.523
  comM Haemophilus influenzae Rd KW20

51.497

100

0.521
  comM Legionella pneumophila str. Paris

48.795

100

0.491
  comM Legionella pneumophila strain ERS1305867

48.795

100

0.491
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.088

100

0.444

Multiple sequence alignment