Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AADH33_RS00270 Genome accession   NZ_CP151283
Coordinates   63661..64380 (+) Length   239 a.a.
NCBI ID   WP_348549999.1    Uniprot ID   A0AAU6S489
Organism   Psychrobacter sp. KFRI-CH2-11     
Function   require for natural transformation (predicted from homology)   
Unclear

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 39749..68608 63661..64380 within 0


Gene organization within MGE regions


Location: 39749..68608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AADH33_RS00160 (AADH33_00160) - 39749..41458 (+) 1710 WP_201585319.1 hypothetical protein -
  AADH33_RS00165 (AADH33_00165) - 41451..41855 (+) 405 WP_225739089.1 hypothetical protein -
  AADH33_RS00170 (AADH33_00170) - 41956..42078 (+) 123 WP_263972656.1 hypothetical protein -
  AADH33_RS00175 (AADH33_00175) - 42026..42148 (+) 123 WP_227680057.1 excalibur calcium-binding domain-containing protein -
  AADH33_RS00180 (AADH33_00180) - 42612..43031 (-) 420 WP_201585318.1 hypothetical protein -
  AADH33_RS00185 (AADH33_00185) - 43024..43500 (-) 477 WP_201585317.1 type II toxin-antitoxin system antitoxin SocA domain-containing protein -
  AADH33_RS00190 (AADH33_00190) - 43682..44248 (-) 567 WP_348549183.1 IS630 family transposase -
  AADH33_RS00195 (AADH33_00195) - 44175..44525 (-) 351 WP_192518616.1 IS630 transposase-related protein -
  AADH33_RS00200 (AADH33_00200) - 44622..45176 (-) 555 WP_192518615.1 hypothetical protein -
  AADH33_RS00205 (AADH33_00205) - 45179..46291 (-) 1113 WP_348549998.1 RHS repeat-associated core domain-containing protein -
  AADH33_RS00210 (AADH33_00210) - 46353..46853 (-) 501 WP_192518622.1 hypothetical protein -
  AADH33_RS00215 (AADH33_00215) - 46866..51689 (-) 4824 WP_192518614.1 RHS repeat-associated core domain-containing protein -
  AADH33_RS00220 (AADH33_00220) - 51696..52049 (-) 354 WP_192518613.1 DUF4150 domain-containing protein -
  AADH33_RS00225 (AADH33_00225) - 52039..53391 (-) 1353 WP_192518612.1 DUF2169 domain-containing protein -
  AADH33_RS00230 (AADH33_00230) tssI 53404..55554 (-) 2151 WP_192518611.1 type VI secretion system tip protein TssI/VgrG -
  AADH33_RS13155 - 55645..56010 (-) 366 Protein_46 DUF5131 family protein -
  AADH33_RS13160 - 55989..56114 (-) 126 WP_225739088.1 DUF5131 family protein -
  AADH33_RS00235 (AADH33_00235) - 56248..56901 (-) 654 WP_348549184.1 hypothetical protein -
  AADH33_RS00240 (AADH33_00240) - 56941..58106 (+) 1166 WP_348548557.1 IS3 family transposase -
  AADH33_RS00245 (AADH33_00245) - 58107..58958 (-) 852 WP_348549185.1 hypothetical protein -
  AADH33_RS00250 (AADH33_00250) - 58936..60093 (-) 1158 WP_192518609.1 TniQ family protein -
  AADH33_RS00255 (AADH33_00255) - 60051..60944 (-) 894 WP_192518608.1 TniB family NTP-binding protein -
  AADH33_RS00260 (AADH33_00260) - 60944..62959 (-) 2016 WP_192518607.1 DDE-type integrase/transposase/recombinase -
  AADH33_RS00265 (AADH33_00265) - 62949..63596 (-) 648 WP_192518606.1 TnsA endonuclease N-terminal domain-containing protein -
  AADH33_RS00270 (AADH33_00270) comM 63661..64380 (+) 720 WP_348549999.1 ATP-binding protein Machinery gene
  AADH33_RS00275 (AADH33_00275) - 64452..65135 (-) 684 WP_348549186.1 phosphoglycolate phosphatase -
  AADH33_RS00280 (AADH33_00280) - 65364..65864 (-) 501 WP_348549187.1 DUF4385 domain-containing protein -
  AADH33_RS00285 (AADH33_00285) - 66055..66411 (+) 357 WP_348549188.1 hypothetical protein -
  AADH33_RS00295 (AADH33_00295) - 66718..67140 (-) 423 WP_348549189.1 hypothetical protein -
  AADH33_RS00300 (AADH33_00300) hisB 67541..68200 (+) 660 WP_243456282.1 imidazoleglycerol-phosphate dehydratase HisB -
  AADH33_RS00305 (AADH33_00305) - 68201..68608 (+) 408 WP_207969957.1 hypothetical protein -

Sequence

Protein


Download         Length: 239 a.a.        Molecular weight: 26191.97 Da        Isoelectric Point: 8.8226

>NTDB_id=976068 AADH33_RS00270 WP_348549999.1 63661..64380(+) (comM) [Psychrobacter sp. KFRI-CH2-11]
MLGSNMLQAKKNALIMTAIVGIDSGSRPKPGEITLADKGVLFLDELPEFDRTVLEVLRQPLEAKQITISRANSQMTFPAS
FQLVAAMNPCPCGYDGDGSGRCRCRPEQIKRYQDKLSGPLLDRIDLHITVPALPIADLQSAQTGETSAQVRERVAAAHQR
QITRQHKVNNALSPSEIDKYVPLGEGEQQLLQLAQQRLNLSARGYHRVLRVARTIADLAASQDVTSAHLSEALSYRGKA

Nucleotide


Download         Length: 720 bp        

>NTDB_id=976068 AADH33_RS00270 WP_348549999.1 63661..64380(+) (comM) [Psychrobacter sp. KFRI-CH2-11]
ATTCTAGGTAGCAATATGCTTCAGGCTAAAAAAAATGCTCTAATTATGACAGCTATTGTTGGAATTGACAGTGGCTCACG
TCCGAAACCTGGTGAAATAACACTTGCTGATAAGGGGGTTTTATTTCTCGATGAGCTGCCAGAGTTTGATCGTACTGTGC
TCGAGGTCTTGCGTCAGCCGTTGGAGGCCAAGCAAATCACCATCAGCCGTGCCAACTCACAAATGACCTTTCCGGCCAGC
TTTCAGCTCGTAGCGGCGATGAACCCTTGCCCATGTGGCTATGACGGTGATGGCTCGGGACGTTGCCGCTGTCGGCCTGA
GCAGATCAAGCGCTATCAAGACAAACTCTCAGGGCCGCTACTCGATCGTATTGATTTGCACATCACTGTACCTGCACTAC
CCATCGCAGACTTGCAGAGCGCGCAGACAGGCGAAACCTCCGCCCAAGTCCGCGAGCGTGTCGCCGCCGCGCATCAACGC
CAAATAACGCGGCAACACAAGGTCAATAATGCACTGAGCCCAAGCGAGATCGATAAGTATGTGCCACTGGGCGAGGGCGA
GCAGCAACTGTTGCAGTTGGCGCAGCAGCGACTTAATTTATCGGCGCGTGGCTATCATAGAGTCTTACGCGTTGCTCGTA
CCATTGCCGATCTTGCCGCTAGTCAGGATGTCACCAGCGCTCATTTGTCCGAGGCGCTCAGCTATCGAGGCAAAGCATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(9-135)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(144-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

53.812

93.305

0.502
  comM Glaesserella parasuis strain SC1401

52.679

93.724

0.494
  comM Legionella pneumophila strain ERS1305867

51.351

92.887

0.477
  comM Legionella pneumophila str. Paris

51.351

92.887

0.477
  comM Vibrio cholerae strain A1552

50.901

92.887

0.473
  comM Vibrio campbellii strain DS40M4

49.776

93.305

0.464
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

48.214

93.724

0.452

Multiple sequence alignment