Detailed information NTG0976042

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: WMB06_RS01480
• Genome accession: NZ_CP151275
• Coordinates: 307802..309130 (+)
• Length: 442 a.a.
• NCBI ID: WP_341677293.1
• Uniprot ID: -
• Organism: Niveibacterium sp. SC-1
• Function: DNA uptake (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	281039..307751	307802..309130	flank	51

Gene organization within MGE regions

Location: 281039..309130

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WMB06_RS01370 (WMB06_01370)	-	281039..281302 (+)	264	WP_341677271.1	heavy-metal-associated domain-containing protein	-
WMB06_RS01375 (WMB06_01375)	-	281398..281997 (+)	600	WP_341677272.1	hypothetical protein	-
WMB06_RS01380 (WMB06_01380)	-	282136..282579 (+)	444	WP_341677273.1	hypothetical protein	-
WMB06_RS01385 (WMB06_01385)	-	282697..282945 (+)	249	WP_341677274.1	hypothetical protein	-
WMB06_RS01390 (WMB06_01390)	istB	283553..284320 (-)	768	WP_341677275.1	IS21-like element helper ATPase IstB	-
WMB06_RS01395 (WMB06_01395)	istA	284317..285852 (-)	1536	WP_341677276.1	IS21 family transposase	-
WMB06_RS01400 (WMB06_01400)	-	286301..286558 (-)	258	WP_341677277.1	helix-turn-helix domain-containing protein	-
WMB06_RS01405 (WMB06_01405)	-	286649..287287 (+)	639	WP_341677278.1	helix-turn-helix transcriptional regulator	-
WMB06_RS01410 (WMB06_01410)	-	287324..287857 (+)	534	WP_341677279.1	hypothetical protein	-
WMB06_RS01415 (WMB06_01415)	cadR	287952..288440 (-)	489	WP_341677280.1	Cd(II)/Pb(II)-responsive transcriptional regulator	-
WMB06_RS01420 (WMB06_01420)	-	288527..290770 (+)	2244	WP_341677281.1	cation-translocating P-type ATPase	-
WMB06_RS01425 (WMB06_01425)	-	290790..291149 (+)	360	WP_341677282.1	hypothetical protein	-
WMB06_RS01430 (WMB06_01430)	-	291261..292553 (+)	1293	WP_341677283.1	TolC family protein	-
WMB06_RS01435 (WMB06_01435)	-	292562..293728 (+)	1167	WP_341677284.1	efflux RND transporter periplasmic adaptor subunit	-
WMB06_RS01440 (WMB06_01440)	-	293746..296868 (+)	3123	WP_341677285.1	CusA/CzcA family heavy metal efflux RND transporter	-
WMB06_RS01445 (WMB06_01445)	-	296870..297208 (+)	339	WP_341677286.1	P-II family nitrogen regulator	-
WMB06_RS01450 (WMB06_01450)	-	297544..298374 (+)	831	WP_341677287.1	SHOCT domain-containing protein	-
WMB06_RS01455 (WMB06_01455)	-	298555..300486 (+)	1932	WP_341677288.1	FTR1 family protein	-
WMB06_RS01460 (WMB06_01460)	-	301142..301978 (+)	837	WP_341677289.1	HNH endonuclease	-
WMB06_RS01465 (WMB06_01465)	-	302024..303013 (-)	990	WP_341677290.1	hypothetical protein	-
WMB06_RS01470 (WMB06_01470)	-	303653..305536 (-)	1884	WP_341677291.1	hypothetical protein	-
WMB06_RS01475 (WMB06_01475)	-	305868..307682 (-)	1815	WP_341677292.1	hypothetical protein	-
WMB06_RS01480 (WMB06_01480)	comM	307802..309130 (+)	1329	WP_341677293.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene

Sequence

Protein

• Length: 442 a.a.
• Molecular weight: 46337.51 Da
• Isoelectric Point: 8.8626

>NTDB_id=976042 WMB06_RS01480 WP_341677293.1 307802..309130(+) (comM) [Niveibacterium sp. SC-1]
MKDSFSCTANLAPADLPKEGGRFDLPIALGILAASGQIRVEALKGMEFAGELSLDGSLRPVRGALAMALAATRAGRVLVL
PAESAAEAALAPRAQVLAAGSLLQVVAHLVGSQSLAAPVLPQAEAGAIAWPDLAEVRGQAAAKRVLEIAAAGRHSLLMFG
PPGSGKSMLAHRLPGLLPPMDEEEALASASVLSLTGGFNAAQWARRPFRAPHHSASAAAMVGGGGSPRPGEISLAHNGLL
FLDELPEFDRRVLECLREPLETGVITVSRVARQVDFPARFQLVAAMNPCPCGYRGDPRGRCRCTPDRVARYRDRLSGPLL
DRIDMLIEVAAVDTAALHASADGESSAAVRERVMRAFALQQRRQGKPNAWLGAAEIDAHCGAEPPAIQLLAKASARLGLS
ARGTHRLLRVARSIADLAARPLIGVAEMSEAIQLRRGLPESA

Nucleotide

• Length: 1329 bp

>NTDB_id=976042 WMB06_RS01480 WP_341677293.1 307802..309130(+) (comM) [Niveibacterium sp. SC-1]
TTGAAGGATAGCTTTAGCTGCACTGCCAACCTCGCGCCGGCCGACTTGCCCAAGGAGGGCGGCCGCTTCGACCTGCCGAT
CGCACTGGGCATCCTCGCGGCCTCCGGGCAGATCCGCGTCGAGGCTCTCAAGGGCATGGAGTTCGCCGGCGAGCTCTCCC
TGGACGGCAGCCTGCGCCCCGTCCGGGGTGCGCTGGCGATGGCGCTGGCGGCGACTCGGGCCGGACGGGTGCTGGTGCTA
CCGGCGGAGAGCGCCGCCGAGGCCGCGCTGGCGCCGCGCGCCCAGGTTCTGGCGGCCGGAAGCCTGCTGCAGGTGGTCGC
GCATCTGGTCGGCAGCCAGTCGCTCGCGGCACCTGTCTTGCCGCAGGCCGAGGCCGGCGCGATCGCCTGGCCGGATCTTG
CCGAAGTCCGCGGCCAGGCGGCCGCCAAGCGGGTGCTGGAGATCGCGGCGGCCGGCCGGCATAGCCTGCTGATGTTCGGG
CCACCGGGCAGCGGCAAATCCATGCTGGCCCATCGCCTGCCTGGCTTGCTGCCGCCCATGGATGAGGAGGAGGCCCTGGC
TTCGGCTTCGGTCCTGTCGCTGACAGGCGGTTTCAACGCCGCCCAGTGGGCCCGCCGTCCCTTCCGCGCACCGCACCACT
CGGCCTCCGCCGCCGCCATGGTGGGTGGCGGCGGATCGCCGCGGCCGGGGGAAATCTCCCTCGCGCACAACGGCCTGCTC
TTCCTCGACGAGCTTCCGGAATTCGACAGGCGGGTCCTGGAGTGCCTGCGCGAACCGTTGGAGACCGGTGTGATCACCGT
GTCGCGCGTGGCGCGGCAGGTCGACTTTCCCGCGCGCTTCCAGCTGGTGGCCGCGATGAATCCATGCCCCTGTGGATACC
GGGGCGATCCGCGCGGTCGGTGCCGTTGCACCCCGGACCGGGTTGCCCGCTACCGGGACCGGTTGTCGGGTCCGCTGCTC
GATCGCATCGACATGCTGATCGAGGTGGCCGCCGTGGATACGGCCGCCCTGCACGCGTCTGCCGATGGGGAGTCCTCGGC
CGCGGTGCGCGAGCGGGTCATGCGCGCCTTCGCGCTGCAGCAGCGCCGGCAAGGCAAGCCCAATGCCTGGCTGGGTGCGG
CCGAGATCGATGCGCACTGCGGTGCCGAGCCGCCGGCGATCCAGTTGCTCGCCAAGGCCAGCGCGCGCCTGGGGCTGTCC
GCCCGCGGCACACATCGCCTGTTGCGGGTGGCGCGCAGCATCGCCGATCTGGCCGCGCGACCCTTGATCGGTGTGGCGGA
AATGTCCGAGGCGATACAACTGCGGCGCGGCCTGCCAGAATCTGCCTGA

Domains

Predicted by InterproScan.

• Subunit ChlI of Mg-chelatase (ChlI) (6-83)

• Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C) (343-435)

• Magnesium chelatase, subunit ChlI (Mg_chelatase) (132-335)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Vibrio campbellii strain DS40M4	53.596	97.511	0.523
comM	Vibrio cholerae strain A1552	52.644	98.416	0.518
comM	Glaesserella parasuis strain SC1401	51.142	99.095	0.507
comM	Haemophilus influenzae Rd KW20	50.114	99.321	0.498
comM	Legionella pneumophila str. Paris	45.578	99.774	0.455
comM	Legionella pneumophila strain ERS1305867	45.578	99.774	0.455
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	43.991	99.774	0.439