Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AADW57_RS01820 Genome accession   NZ_CP151273
Coordinates   399202..399708 (+) Length   168 a.a.
NCBI ID   WP_341668350.1    Uniprot ID   -
Organism   Alcaligenes sp. SDU_A2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 394202..404708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AADW57_RS01810 (AADW57_01810) uvrA 394699..397554 (-) 2856 WP_341668348.1 excinuclease ABC subunit UvrA -
  AADW57_RS01815 (AADW57_01815) - 397667..398878 (+) 1212 WP_341668349.1 MFS transporter -
  AADW57_RS01820 (AADW57_01820) ssb 399202..399708 (+) 507 WP_341668350.1 single-stranded DNA-binding protein Machinery gene
  AADW57_RS01825 (AADW57_01825) - 400308..401873 (+) 1566 WP_341668351.1 Fic family protein -
  AADW57_RS01830 (AADW57_01830) - 401891..402628 (-) 738 WP_341668352.1 metallophosphoesterase family protein -
  AADW57_RS01835 (AADW57_01835) - 402671..403894 (-) 1224 WP_341668353.1 MFS transporter -
  AADW57_RS01840 (AADW57_01840) - 403878..404420 (-) 543 WP_341668354.1 Chromate resistance protein ChrB -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18664.64 Da        Isoelectric Point: 5.3335

>NTDB_id=976027 AADW57_RS01820 WP_341668350.1 399202..399708(+) (ssb) [Alcaligenes sp. SDU_A2]
MASVNKVILVGNLGRDPEVRYSAEGSAICNISIATTSQWKDRNSGERREETEWHRVVFYNRLAEIAGEYLKKGRSVYVEG
RLRTRKWTGQDNQERYTTEIIAEQMQMLGGRDGGDMGGGASMGGGDYGNSAPAPQRAPRQAPQQQQQAPRNNPPMSDNLA
DMDDDIPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=976027 AADW57_RS01820 WP_341668350.1 399202..399708(+) (ssb) [Alcaligenes sp. SDU_A2]
ATGGCATCGGTAAATAAAGTCATTCTGGTCGGCAATCTCGGCCGCGACCCAGAAGTACGCTACAGCGCGGAAGGTTCGGC
CATCTGCAATATTTCCATTGCCACGACCTCTCAGTGGAAGGACCGTAACTCCGGCGAGCGCCGCGAGGAAACCGAGTGGC
ACCGTGTGGTGTTCTACAATCGCCTGGCGGAAATCGCCGGCGAATACCTGAAAAAAGGCCGCTCCGTTTACGTCGAAGGC
CGCCTGCGCACCCGCAAGTGGACCGGTCAGGACAACCAGGAACGCTATACCACCGAAATCATCGCCGAACAGATGCAAAT
GCTGGGTGGACGCGACGGCGGCGATATGGGCGGCGGTGCCAGCATGGGTGGTGGCGACTACGGCAACAGCGCGCCGGCCC
CCCAGCGCGCTCCGCGTCAGGCTCCGCAACAGCAGCAACAGGCCCCGCGCAATAACCCGCCCATGTCGGATAATCTGGCG
GACATGGATGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.717

100

0.577
  ssb Neisseria meningitidis MC58

50.847

100

0.536
  ssb Neisseria gonorrhoeae MS11

50.847

100

0.536
  ssb Glaesserella parasuis strain SC1401

46.597

100

0.53

Multiple sequence alignment