Detailed information
Bioinformatically predicted
Overview
| Name | dprA | Type | Machinery gene |
| Locus tag | AADP85_RS06000 | Genome accession | NZ_CP151185 |
| Coordinates | 1250134..1251006 (+) | Length | 290 a.a. |
| NCBI ID | WP_031786943.1 | Uniprot ID | - |
| Organism | Staphylococcus argenteus strain Dubai-30 | ||
| Function | ssDNA binding; loading RecA onto ssDNA (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1213538..1295909 | 1250134..1251006 | within | 0 |
Gene organization within MGE regions
Location: 1213538..1295909
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AADP85_RS05835 (AADP85_05835) | - | 1213693..1213896 (-) | 204 | WP_001198027.1 | TM2 domain-containing protein | - |
| AADP85_RS05840 (AADP85_05840) | - | 1214197..1214685 (+) | 489 | WP_031787794.1 | peptide deformylase | - |
| AADP85_RS05845 (AADP85_05845) | fmt | 1214678..1215613 (+) | 936 | WP_000161302.1 | methionyl-tRNA formyltransferase | - |
| AADP85_RS05850 (AADP85_05850) | rsmB | 1215610..1216917 (+) | 1308 | WP_031787795.1 | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | - |
| AADP85_RS05855 (AADP85_05855) | rlmN | 1216920..1218014 (+) | 1095 | WP_000626892.1 | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | - |
| AADP85_RS05860 (AADP85_05860) | - | 1218021..1218764 (+) | 744 | WP_000888496.1 | protein-serine/threonine phosphatase Stp1 | - |
| AADP85_RS05865 (AADP85_05865) | pknB | 1218761..1220755 (+) | 1995 | WP_031787796.1 | serine/threonine protein kinase Stk1 | - |
| AADP85_RS05870 (AADP85_05870) | rsgA | 1221022..1221897 (+) | 876 | WP_000847920.1 | ribosome small subunit-dependent GTPase A | - |
| AADP85_RS05875 (AADP85_05875) | rpe | 1221898..1222542 (+) | 645 | WP_031787797.1 | ribulose-phosphate 3-epimerase | - |
| AADP85_RS05880 (AADP85_05880) | - | 1222549..1223193 (+) | 645 | WP_031787798.1 | thiamine diphosphokinase | - |
| AADP85_RS05885 (AADP85_05885) | rpmB | 1223443..1223631 (-) | 189 | WP_000517908.1 | 50S ribosomal protein L28 | - |
| AADP85_RS05890 (AADP85_05890) | - | 1224075..1224449 (+) | 375 | WP_031787799.1 | Asp23/Gls24 family envelope stress response protein | - |
| AADP85_RS05895 (AADP85_05895) | fakA | 1224464..1226110 (+) | 1647 | WP_031787800.1 | fatty acid kinase catalytic subunit FakA | - |
| AADP85_RS05900 (AADP85_05900) | recG | 1226284..1228344 (+) | 2061 | WP_031787801.1 | ATP-dependent DNA helicase RecG | - |
| AADP85_RS05905 (AADP85_05905) | fapR | 1228749..1229321 (+) | 573 | WP_072292002.1 | transcription factor FapR | - |
| AADP85_RS05910 (AADP85_05910) | plsX | 1229326..1230312 (+) | 987 | WP_000239751.1 | phosphate acyltransferase PlsX | - |
| AADP85_RS05915 (AADP85_05915) | fabD | 1230305..1231231 (+) | 927 | WP_031787802.1 | ACP S-malonyltransferase | - |
| AADP85_RS05920 (AADP85_05920) | fabG | 1231224..1231958 (+) | 735 | WP_000167268.1 | 3-oxoacyl-[acyl-carrier-protein] reductase | - |
| AADP85_RS05925 (AADP85_05925) | - | 1232428..1232661 (+) | 234 | WP_000426914.1 | acyl carrier protein | - |
| AADP85_RS05930 (AADP85_05930) | rnc | 1232777..1233508 (+) | 732 | WP_000043235.1 | ribonuclease III | - |
| AADP85_RS05935 (AADP85_05935) | smc | 1233640..1237209 (+) | 3570 | WP_031788253.1 | chromosome segregation protein SMC | - |
| AADP85_RS05940 (AADP85_05940) | ftsY | 1237206..1238456 (+) | 1251 | WP_031788254.1 | signal recognition particle-docking protein FtsY | - |
| AADP85_RS05945 (AADP85_05945) | - | 1238443..1238775 (+) | 333 | WP_000531321.1 | putative DNA-binding protein | - |
| AADP85_RS05950 (AADP85_05950) | ffh | 1238800..1240167 (+) | 1368 | WP_000863483.1 | signal recognition particle protein | - |
| AADP85_RS05955 (AADP85_05955) | rpsP | 1240496..1240771 (+) | 276 | WP_000268754.1 | 30S ribosomal protein S16 | - |
| AADP85_RS05960 (AADP85_05960) | rimM | 1240958..1241461 (+) | 504 | WP_001261978.1 | ribosome maturation factor RimM | - |
| AADP85_RS05965 (AADP85_05965) | trmD | 1241461..1242198 (+) | 738 | WP_031786939.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| AADP85_RS05970 (AADP85_05970) | rplS | 1242301..1242651 (+) | 351 | WP_000181404.1 | 50S ribosomal protein L19 | - |
| AADP85_RS05975 (AADP85_05975) | - | 1242893..1245499 (-) | 2607 | WP_031786940.1 | YfhO family protein | - |
| AADP85_RS05980 (AADP85_05980) | ylqF | 1245899..1246783 (+) | 885 | WP_031786941.1 | ribosome biogenesis GTPase YlqF | - |
| AADP85_RS05985 (AADP85_05985) | - | 1246767..1247534 (+) | 768 | WP_031786942.1 | ribonuclease HII | - |
| AADP85_RS05990 (AADP85_05990) | sucC | 1247643..1248809 (+) | 1167 | WP_001020805.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| AADP85_RS05995 (AADP85_05995) | sucD | 1248831..1249739 (+) | 909 | WP_000110253.1 | succinate--CoA ligase subunit alpha | - |
| AADP85_RS06000 (AADP85_06000) | dprA | 1250134..1251006 (+) | 873 | WP_031786943.1 | DNA-processing protein DprA | Machinery gene |
| AADP85_RS06005 (AADP85_06005) | topA | 1251180..1253255 (+) | 2076 | WP_072324151.1 | type I DNA topoisomerase | - |
| AADP85_RS06010 (AADP85_06010) | trmFO | 1253411..1254718 (+) | 1308 | WP_000195261.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| AADP85_RS06015 (AADP85_06015) | xerC | 1255133..1256029 (+) | 897 | WP_031786945.1 | tyrosine recombinase XerC | - |
| AADP85_RS06020 (AADP85_06020) | hslV | 1256026..1256571 (+) | 546 | WP_000072683.1 | ATP-dependent protease subunit HslV | - |
| AADP85_RS06025 (AADP85_06025) | hslU | 1256636..1258039 (+) | 1404 | WP_000381629.1 | ATP-dependent protease ATPase subunit HslU | - |
| AADP85_RS06030 (AADP85_06030) | codY | 1258064..1258837 (+) | 774 | WP_000055333.1 | GTP-sensing pleiotropic transcriptional regulator CodY | - |
| AADP85_RS06035 (AADP85_06035) | rpsB | 1259114..1259881 (+) | 768 | WP_000268484.1 | 30S ribosomal protein S2 | - |
| AADP85_RS06040 (AADP85_06040) | - | 1259933..1260028 (+) | 96 | WP_225995268.1 | hypothetical protein | - |
| AADP85_RS06045 (AADP85_06045) | tsf | 1260063..1260944 (+) | 882 | WP_031786946.1 | translation elongation factor Ts | - |
| AADP85_RS06050 (AADP85_06050) | pyrH | 1261081..1261803 (+) | 723 | WP_000057330.1 | UMP kinase | - |
| AADP85_RS06055 (AADP85_06055) | frr | 1261822..1262376 (+) | 555 | WP_001280034.1 | ribosome recycling factor | - |
| AADP85_RS06060 (AADP85_06060) | - | 1262737..1263507 (+) | 771 | WP_000473698.1 | isoprenyl transferase | - |
| AADP85_RS06065 (AADP85_06065) | - | 1263514..1264296 (+) | 783 | WP_000868415.1 | phosphatidate cytidylyltransferase | - |
| AADP85_RS06070 (AADP85_06070) | rseP | 1264507..1265793 (+) | 1287 | WP_031786947.1 | RIP metalloprotease RseP | - |
| AADP85_RS06075 (AADP85_06075) | - | 1265813..1267516 (+) | 1704 | WP_031786948.1 | proline--tRNA ligase | - |
| AADP85_RS06080 (AADP85_06080) | - | 1267790..1272101 (+) | 4312 | Protein_1188 | PolC-type DNA polymerase III | - |
| AADP85_RS06085 (AADP85_06085) | rimP | 1272377..1272844 (+) | 468 | WP_031786950.1 | ribosome maturation factor RimP | - |
| AADP85_RS06090 (AADP85_06090) | nusA | 1272865..1274040 (+) | 1176 | WP_000097470.1 | transcription termination factor NusA | - |
| AADP85_RS06095 (AADP85_06095) | - | 1274061..1274345 (+) | 285 | WP_031786951.1 | YlxR family RNase P modulator | - |
| AADP85_RS06100 (AADP85_06100) | - | 1274342..1274659 (+) | 318 | WP_000021269.1 | YlxQ family RNA-binding protein | - |
| AADP85_RS06105 (AADP85_06105) | infB | 1274664..1276790 (+) | 2127 | WP_000043647.1 | translation initiation factor IF-2 | - |
| AADP85_RS06110 (AADP85_06110) | rbfA | 1277119..1277469 (+) | 351 | WP_000097321.1 | 30S ribosome-binding factor RbfA | - |
| AADP85_RS06115 (AADP85_06115) | truB | 1277641..1278558 (+) | 918 | WP_000282309.1 | tRNA pseudouridine(55) synthase TruB | - |
| AADP85_RS06120 (AADP85_06120) | ribF | 1278573..1279544 (+) | 972 | WP_031786952.1 | riboflavin biosynthesis protein RibF | - |
| AADP85_RS06125 (AADP85_06125) | rpsO | 1279659..1279928 (+) | 270 | WP_001018327.1 | 30S ribosomal protein S15 | - |
| AADP85_RS06130 (AADP85_06130) | pnp | 1280295..1282391 (+) | 2097 | WP_000076680.1 | polyribonucleotide nucleotidyltransferase | - |
| AADP85_RS06135 (AADP85_06135) | - | 1282634..1284307 (+) | 1674 | WP_000052592.1 | ribonuclease J | - |
| AADP85_RS06140 (AADP85_06140) | - | 1284579..1286951 (+) | 2373 | WP_031786953.1 | DNA translocase FtsK | - |
| AADP85_RS06145 (AADP85_06145) | - | 1286955..1287668 (+) | 714 | WP_001293301.1 | GntR family transcriptional regulator | - |
| AADP85_RS06150 (AADP85_06150) | - | 1287699..1288964 (+) | 1266 | WP_031786954.1 | pitrilysin family protein | - |
| AADP85_RS06155 (AADP85_06155) | - | 1288964..1290250 (+) | 1287 | WP_031786955.1 | pitrilysin family protein | - |
| AADP85_RS06160 (AADP85_06160) | - | 1290250..1290954 (+) | 705 | WP_000646238.1 | SDR family NAD(P)-dependent oxidoreductase | - |
| AADP85_RS06165 (AADP85_06165) | - | 1291062..1291889 (+) | 828 | WP_031786956.1 | DUF3388 domain-containing protein | - |
| AADP85_RS06170 (AADP85_06170) | - | 1291914..1292306 (+) | 393 | WP_000859442.1 | RodZ family helix-turn-helix domain-containing protein | - |
| AADP85_RS06175 (AADP85_06175) | pgsA | 1292338..1292916 (+) | 579 | WP_031786957.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| AADP85_RS06180 (AADP85_06180) | - | 1293158..1294309 (+) | 1152 | WP_031786958.1 | CinA family nicotinamide mononucleotide deamidase-related protein | - |
| AADP85_RS06185 (AADP85_06185) | recA | 1294474..1295517 (+) | 1044 | WP_000368169.1 | recombinase RecA | Machinery gene |
| AADP85_RS06190 (AADP85_06190) | - | 1295699..1295862 (-) | 164 | Protein_1210 | hypothetical protein | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 33128.01 Da Isoelectric Point: 9.3910
>NTDB_id=975707 AADP85_RS06000 WP_031786943.1 1250134..1251006(+) (dprA) [Staphylococcus argenteus strain Dubai-30]
MLNQILLKLIWSHFTTSQIHQLFNKFPNFLEVDELEQNYLLRKFVLNNSNENLSIKNEVYSRISFDEIMSNIQQSKLNFI
TCFDKGYPSYLKEIYDYPFVLFYKGSINILSSPKALAVVGSRVSSNYTTKALNHLFYSFQQSNLTIVSGLAQGADAMAHQ
TALKYNLPTIAVLAFGHQTHYPKSTRALRNKIEEKGLVISEYPPHTPIARYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDILEDYFI
MLNQILLKLIWSHFTTSQIHQLFNKFPNFLEVDELEQNYLLRKFVLNNSNENLSIKNEVYSRISFDEIMSNIQQSKLNFI
TCFDKGYPSYLKEIYDYPFVLFYKGSINILSSPKALAVVGSRVSSNYTTKALNHLFYSFQQSNLTIVSGLAQGADAMAHQ
TALKYNLPTIAVLAFGHQTHYPKSTRALRNKIEEKGLVISEYPPHTPIARYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDILEDYFI
Nucleotide
Download Length: 873 bp
>NTDB_id=975707 AADP85_RS06000 WP_031786943.1 1250134..1251006(+) (dprA) [Staphylococcus argenteus strain Dubai-30]
ATGTTAAATCAAATTCTACTTAAATTAATTTGGAGTCATTTTACAACTTCGCAAATTCACCAGCTATTTAATAAATTTCC
AAACTTTTTAGAAGTAGATGAACTTGAACAAAATTATCTACTACGCAAATTTGTTTTAAATAATTCAAATGAGAATCTTT
CGATTAAAAATGAGGTTTATAGTCGAATTTCTTTTGATGAAATAATGTCAAATATCCAACAAAGCAAATTGAACTTTATA
ACTTGTTTTGATAAAGGGTATCCTAGTTACTTAAAAGAAATTTACGACTATCCATTTGTTTTATTTTATAAAGGGAGTAT
TAATATCCTCAGTTCTCCTAAAGCATTAGCTGTAGTTGGTTCGAGAGTTTCAAGCAATTATACAACAAAAGCATTGAACC
ATCTTTTCTATTCGTTCCAACAATCAAATTTAACAATTGTTTCCGGCCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ACAGCATTAAAATACAATCTCCCTACAATAGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGTACACGAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTGATATCCGAATATCCACCGCATACACCAATTGCTAGATATAGATTTC
CAGAACGAAATAGAATTATCAGTGGGTTGTCAAAAGGGGTTCTAATAACAGAAGCTAAAGAACAAAGTGGTAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAACAGAAATGTTTATGTTTTACCAGGATCAATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGAGCTAAGGTAGTTTTAAACGCTAATGATATATTAGAAGATTACTTTATTTAA
ATGTTAAATCAAATTCTACTTAAATTAATTTGGAGTCATTTTACAACTTCGCAAATTCACCAGCTATTTAATAAATTTCC
AAACTTTTTAGAAGTAGATGAACTTGAACAAAATTATCTACTACGCAAATTTGTTTTAAATAATTCAAATGAGAATCTTT
CGATTAAAAATGAGGTTTATAGTCGAATTTCTTTTGATGAAATAATGTCAAATATCCAACAAAGCAAATTGAACTTTATA
ACTTGTTTTGATAAAGGGTATCCTAGTTACTTAAAAGAAATTTACGACTATCCATTTGTTTTATTTTATAAAGGGAGTAT
TAATATCCTCAGTTCTCCTAAAGCATTAGCTGTAGTTGGTTCGAGAGTTTCAAGCAATTATACAACAAAAGCATTGAACC
ATCTTTTCTATTCGTTCCAACAATCAAATTTAACAATTGTTTCCGGCCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ACAGCATTAAAATACAATCTCCCTACAATAGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGTACACGAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTGATATCCGAATATCCACCGCATACACCAATTGCTAGATATAGATTTC
CAGAACGAAATAGAATTATCAGTGGGTTGTCAAAAGGGGTTCTAATAACAGAAGCTAAAGAACAAAGTGGTAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAACAGAAATGTTTATGTTTTACCAGGATCAATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGAGCTAAGGTAGTTTTAAACGCTAATGATATATTAGAAGATTACTTTATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| dprA | Staphylococcus aureus MW2 |
67.123 |
100 |
0.676 |
| dprA | Staphylococcus aureus N315 |
67.123 |
100 |
0.676 |
| dprA/cilB/dalA | Streptococcus pneumoniae Rx1 |
37.722 |
96.897 |
0.366 |
| dprA/cilB/dalA | Streptococcus pneumoniae D39 |
37.722 |
96.897 |
0.366 |
| dprA/cilB/dalA | Streptococcus pneumoniae R6 |
37.722 |
96.897 |
0.366 |
| dprA/cilB/dalA | Streptococcus pneumoniae TIGR4 |
37.722 |
96.897 |
0.366 |
| dprA/cilB/dalA | Streptococcus mitis SK321 |
37.722 |
96.897 |
0.366 |
| dprA/cilB/dalA | Streptococcus mitis NCTC 12261 |
37.367 |
96.897 |
0.362 |