Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AAC899_RS15045 Genome accession   NZ_CP151168
Coordinates   3191459..3192946 (+) Length   495 a.a.
NCBI ID   WP_111812618.1    Uniprot ID   -
Organism   Acinetobacter soli strain HY24     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3186459..3197946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAC899_RS15020 (AAC899_15020) ribD 3187403..3188491 (-) 1089 WP_171402663.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  AAC899_RS15025 (AAC899_15025) nrdR 3188498..3188962 (-) 465 WP_004932226.1 transcriptional regulator NrdR -
  AAC899_RS15030 (AAC899_15030) - 3189086..3190486 (-) 1401 WP_004944162.1 ammonium transporter -
  AAC899_RS15035 (AAC899_15035) glnK 3190549..3190887 (-) 339 WP_004281042.1 P-II family nitrogen regulator -
  AAC899_RS15040 (AAC899_15040) - 3191162..3191389 (+) 228 WP_111812617.1 accessory factor UbiK family protein -
  AAC899_RS15045 (AAC899_15045) comM 3191459..3192946 (+) 1488 WP_111812618.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AAC899_RS15050 (AAC899_15050) - 3192990..3193802 (-) 813 WP_004932151.1 TorF family putative porin -
  AAC899_RS15055 (AAC899_15055) - 3194418..3195719 (+) 1302 WP_111812619.1 OprD family outer membrane porin -
  AAC899_RS15060 (AAC899_15060) ppa 3195811..3196338 (-) 528 WP_004932145.1 inorganic diphosphatase -
  AAC899_RS15065 (AAC899_15065) - 3196458..3196856 (-) 399 WP_004932141.1 MAPEG family protein -
  AAC899_RS15070 (AAC899_15070) - 3196966..3197352 (+) 387 WP_004932138.1 hypothetical protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54207.32 Da        Isoelectric Point: 8.1549

>NTDB_id=975598 AAC899_RS15045 WP_111812618.1 3191459..3192946(+) (comM) [Acinetobacter soli strain HY24]
MSFAKILTRGVLGLHAPQIEVEVHLSQGLPSLTIVGLPEAAVRESKDRVRSAIINSGFQFPSKRLTINLAPADLPKDGSR
LDLPIALGILIASGQLPEGCTNGYELVGELALDGHLRPVSSTLTIAIACQQAGHQLIAPQDNSLEIGQLPQFQAYAASHL
KQVCDHFQKIHPLDPVVLIQDHDLHHYPFDLADVKGQLRPRRALEIAAAGGHSLLFRGPPGTGKTLLASRLPSILPPLSA
QENLEVASIYSIANTRHPFGLRPFRAPHHTASAIALVGGGSNPKPGEITLSHLGVLFLDELPEFDRKVLEVLRQPLEAKA
ITISRAARQISFPANFQLIAAMNPCPCGYAFNQDQRCQCTPEAIKRYQGRISGPLLDRIDLHIDVPPLQAHELQNTAPVE
DSASVRARVQKAYHYQIQRQQCLNQALSPKQLEAFAQLSPATEKIMSLAQQKLNLSARAYHRVLRVARTIADLEQSPLIE
RHHLNEALSYRTDMS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=975598 AAC899_RS15045 WP_111812618.1 3191459..3192946(+) (comM) [Acinetobacter soli strain HY24]
ATGTCTTTTGCCAAAATTCTCACGCGAGGAGTTTTAGGGTTACACGCACCACAAATTGAAGTAGAAGTTCATTTAAGTCA
AGGGCTTCCATCACTCACCATCGTTGGTTTACCAGAGGCTGCCGTTCGCGAAAGTAAAGATCGGGTGCGCTCAGCCATTA
TCAACAGTGGCTTTCAGTTTCCCAGTAAACGCCTCACAATAAACCTTGCTCCAGCAGATTTGCCCAAAGATGGGTCACGT
TTAGACCTTCCCATTGCCTTGGGAATTTTAATCGCATCTGGACAACTCCCCGAAGGCTGCACCAATGGTTATGAGTTGGT
AGGCGAACTGGCTCTCGATGGTCATCTTCGTCCAGTCAGTAGCACATTGACCATTGCAATTGCCTGTCAGCAGGCAGGAC
ATCAACTTATTGCTCCGCAAGACAACAGTCTTGAAATTGGTCAGTTACCACAGTTTCAGGCCTATGCAGCCAGCCATTTA
AAACAGGTCTGTGATCACTTTCAAAAGATTCATCCGCTTGATCCGGTTGTATTGATACAAGATCACGATCTACATCACTA
CCCTTTTGATCTTGCCGATGTCAAAGGTCAGCTACGTCCTCGCCGCGCTCTTGAAATTGCGGCAGCTGGAGGACACTCAC
TCTTATTTAGAGGGCCACCGGGAACAGGTAAAACTTTGCTGGCGTCACGCTTACCCAGCATATTGCCACCACTGTCTGCC
CAAGAAAATCTAGAAGTGGCCAGCATCTATTCAATTGCAAATACCCGTCATCCATTTGGTTTAAGGCCATTTCGAGCACC
GCATCATACTGCTTCAGCCATCGCCTTGGTGGGGGGTGGATCAAACCCAAAGCCCGGCGAAATCACGCTGTCGCATTTGG
GCGTACTCTTTTTGGATGAACTGCCCGAGTTTGATCGCAAGGTGCTGGAGGTTTTAAGGCAGCCGCTAGAAGCCAAAGCC
ATCACGATTTCAAGAGCTGCACGTCAAATTTCATTTCCGGCCAATTTTCAATTGATCGCTGCAATGAATCCATGTCCGTG
CGGTTATGCCTTTAATCAGGATCAACGCTGTCAATGCACACCCGAAGCAATTAAGCGTTATCAAGGTCGAATTTCTGGCC
CGTTACTTGACCGTATCGATTTACATATTGATGTACCGCCACTTCAAGCACACGAACTACAAAATACGGCGCCTGTTGAA
GATTCAGCAAGTGTTCGCGCACGTGTGCAAAAGGCTTATCACTATCAGATCCAACGCCAGCAATGCTTAAATCAGGCGCT
ATCACCAAAACAGCTTGAAGCATTTGCTCAGCTTAGTCCTGCAACTGAAAAAATTATGTCTTTGGCGCAGCAAAAACTCA
ATTTATCGGCTCGGGCTTATCATCGGGTACTGCGCGTGGCACGAACCATCGCAGATTTGGAGCAAAGTCCACTCATTGAG
CGGCACCATTTGAATGAAGCATTATCGTATCGTACCGATATGAGCTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

50.101

100

0.501
  comM Legionella pneumophila str. Paris

49.499

100

0.499
  comM Legionella pneumophila strain ERS1305867

49.499

100

0.499
  comM Glaesserella parasuis strain SC1401

49.098

100

0.495
  comM Haemophilus influenzae Rd KW20

48.497

100

0.489
  comM Vibrio cholerae strain A1552

48.485

100

0.485
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.527

100

0.463

Multiple sequence alignment