Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   WKK05_RS30555 Genome accession   NZ_CP151099
Coordinates   7075276..7075641 (-) Length   121 a.a.
NCBI ID   WP_341526756.1    Uniprot ID   -
Organism   Nostoc sp. UHCC 0302     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 7070276..7080641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WKK05_RS30545 (WKK05_30135) - 7071774..7074716 (-) 2943 WP_341526754.1 methyl-accepting chemotaxis protein -
  WKK05_RS30550 (WKK05_30140) - 7074732..7075262 (-) 531 WP_341526755.1 chemotaxis protein CheW -
  WKK05_RS30555 (WKK05_30145) pilH 7075276..7075641 (-) 366 WP_341526756.1 response regulator Machinery gene
  WKK05_RS30560 (WKK05_30150) - 7075979..7077157 (-) 1179 WP_341526757.1 response regulator -
  WKK05_RS30565 (WKK05_30155) hmpF 7077562..7079322 (+) 1761 WP_341526758.1 pilus motility taxis protein HmpF -
  WKK05_RS30570 (WKK05_30160) tilS 7079387..7080397 (-) 1011 WP_341526759.1 tRNA lysidine(34) synthetase TilS -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13340.44 Da        Isoelectric Point: 4.8604

>NTDB_id=974851 WKK05_RS30555 WP_341526756.1 7075276..7075641(-) (pilH) [Nostoc sp. UHCC 0302]
MSTVLIVEDSIAQREMITDLLKASGLTVTHASDGLEALEAIQSTPPDLVVLDIVMPRMNGYEVCRRLKSDPKTQNVPVVM
CSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLLRG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=974851 WKK05_RS30555 WP_341526756.1 7075276..7075641(-) (pilH) [Nostoc sp. UHCC 0302]
ATGAGTACAGTTCTGATTGTGGAAGACAGTATCGCACAAAGGGAGATGATCACAGACCTCCTAAAAGCAAGTGGCTTAAC
AGTCACCCATGCTAGCGACGGATTAGAAGCGTTGGAGGCAATTCAAAGCACGCCTCCCGATTTAGTAGTACTGGATATTG
TCATGCCCCGGATGAACGGCTACGAAGTTTGTCGGCGGTTAAAGTCTGATCCGAAAACTCAAAATGTTCCTGTAGTTATG
TGTTCATCCAAAGGTGAAGAATTTGATCGCTACTGGGGTATGAAGCAAGGAGCAGACGCCTACATAGCCAAACCGTTTCA
ACCAACCGAGTTGGTGGGGACAGTCAAACAACTGCTGCGAGGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

76.86

100

0.769
  micA Streptococcus pneumoniae Cp1015

39.167

99.174

0.388
  pilL-C Synechocystis sp. PCC 6803

38.017

100

0.38
  pilG Acinetobacter baumannii strain A118

40.351

94.215

0.38
  vicR Streptococcus mutans UA159

38.333

99.174

0.38

Multiple sequence alignment