Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AABD60_RS00285 Genome accession   NZ_CP150941
Coordinates   55654..57174 (-) Length   506 a.a.
NCBI ID   WP_034168566.1    Uniprot ID   -
Organism   Edwardsiella piscicida strain LADL-16005     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 50654..62174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABD60_RS00265 (AABD60_00265) rfaF 51062..52123 (-) 1062 WP_012846963.1 ADP-heptose--LPS heptosyltransferase RfaF -
  AABD60_RS00270 (AABD60_00270) rfaD 52147..53076 (-) 930 WP_012846964.1 ADP-glyceromanno-heptose 6-epimerase -
  AABD60_RS00275 (AABD60_00275) - 53367..54563 (+) 1197 WP_012846965.1 glycine C-acetyltransferase -
  AABD60_RS00280 (AABD60_00280) tdh 54573..55598 (+) 1026 WP_012846966.1 L-threonine 3-dehydrogenase -
  AABD60_RS00285 (AABD60_00285) comM 55654..57174 (-) 1521 WP_034168566.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AABD60_RS00290 (AABD60_00290) - 57462..58697 (+) 1236 WP_034168567.1 MFS transporter -
  AABD60_RS00295 (AABD60_00295) ilvL 58825..58923 (+) 99 WP_071818493.1 ilv operon leader peptide -
  AABD60_RS00300 (AABD60_00300) ilvG 59061..60710 (+) 1650 WP_034168568.1 acetolactate synthase 2 catalytic subunit -
  AABD60_RS00305 (AABD60_00305) ilvM 60707..60997 (+) 291 WP_012846970.1 acetolactate synthase 2 small subunit -
  AABD60_RS00310 (AABD60_00310) - 61050..61979 (+) 930 WP_012846971.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53829.20 Da        Isoelectric Point: 9.3863

>NTDB_id=974104 AABD60_RS00285 WP_034168566.1 55654..57174(-) (comM) [Edwardsiella piscicida strain LADL-16005]
MTLATVYTRAALGIQAPEVRIEAHIGNGLPGFTLVGLPETAVREAKDRVRCAMLNSGFQFPPKRITLNLAPADLPKEGGR
YDLPMALALLLASEQLAPRVSVGDYEFIGELALSGDLRSVQGALPAALSAARAKRTLIAPSDNAAELGLLAAPRPPVAPS
LLAVCAFLSGQASLETAPAGKMTSDCAGAGDMADIIGQAQARRALEIAAAGGHNLLLIGPPGTGKTMLACRLPGLLPPMT
PDEALEQAAISSLAYPGTMPPRYGMRPFRAPHHSASMAALIGGGPLPKPGEISLAHHGVLFLDELAEFDRRTLDALREPL
ESGVVHLSRARIKVSFPARVQLVAAMNPSSGGHADGRDRRAAPQQVLRYLSRLSGPLLDRFDLSIDVPPLSPGLLARQRA
DGEDSATLRRRVCAARARQYARGGRLNAHLEGAARDRDCRLAPDDALYLEQALTRLALSVRAWHRLLKVARTLADLEGCD
DIARRHLAEALSYRAMDRLLLSLQRG

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=974104 AABD60_RS00285 WP_034168566.1 55654..57174(-) (comM) [Edwardsiella piscicida strain LADL-16005]
ATGACTCTGGCCACTGTATACACGCGCGCCGCCCTGGGTATTCAAGCCCCCGAAGTCCGCATTGAGGCGCATATCGGCAA
CGGCCTACCGGGCTTTACCCTGGTGGGCCTGCCGGAAACAGCCGTACGCGAAGCCAAAGATCGGGTGCGCTGCGCCATGT
TGAACAGCGGATTTCAGTTCCCGCCGAAGCGCATTACGCTGAACCTGGCACCCGCCGATCTGCCTAAGGAAGGGGGGCGC
TACGATCTGCCGATGGCGCTGGCGCTGCTGCTGGCGTCCGAACAGCTGGCCCCACGCGTATCCGTTGGCGACTATGAATT
TATCGGCGAGCTGGCCCTGTCCGGCGATCTGCGTTCAGTACAGGGGGCGCTGCCCGCCGCGCTGAGCGCCGCCCGCGCGA
AGCGCACCCTAATAGCGCCCAGTGATAACGCGGCGGAACTCGGGCTGCTGGCAGCCCCTCGTCCCCCCGTCGCGCCGTCG
CTGCTGGCCGTCTGCGCCTTTCTGAGCGGCCAGGCATCCCTAGAGACCGCGCCGGCCGGCAAGATGACGAGCGACTGCGC
GGGCGCCGGCGATATGGCCGACATTATCGGTCAGGCGCAGGCGCGACGGGCGCTGGAGATCGCCGCCGCCGGTGGACATA
ATCTACTGCTGATCGGGCCGCCGGGCACCGGTAAAACCATGCTGGCCTGTCGCCTGCCGGGCCTGCTGCCGCCGATGACC
CCGGATGAGGCGCTAGAGCAGGCGGCCATCAGCAGCCTAGCCTACCCGGGCACAATGCCGCCGCGCTATGGCATGCGCCC
CTTTCGCGCGCCACACCACAGCGCCTCCATGGCCGCGCTGATCGGCGGGGGGCCGCTGCCGAAGCCCGGCGAAATCTCGC
TGGCCCATCACGGCGTCCTGTTTCTTGACGAGCTGGCCGAATTCGATCGGCGAACCCTGGACGCCCTGCGCGAACCGCTG
GAGTCCGGCGTCGTCCACCTGTCTCGCGCCAGGATAAAGGTCAGCTTTCCCGCCCGAGTACAGCTGGTGGCGGCCATGAA
CCCCAGCAGCGGTGGCCACGCTGACGGACGCGATCGCCGGGCGGCGCCACAGCAGGTACTAAGATACCTCTCCCGGCTGT
CCGGCCCCCTGCTTGACCGCTTCGATCTGTCGATTGATGTGCCGCCGCTGTCACCGGGACTGCTGGCTCGCCAGCGGGCG
GATGGCGAAGACAGTGCGACTCTGCGCCGACGCGTGTGCGCCGCTCGGGCGCGGCAGTACGCCCGCGGCGGCCGGCTCAA
TGCGCATCTGGAGGGTGCCGCCCGCGATCGCGACTGCCGGCTGGCGCCGGACGATGCCCTCTATCTGGAGCAGGCGCTCA
CGCGCCTGGCGCTATCGGTACGCGCTTGGCATCGGCTGCTGAAAGTCGCACGTACGCTGGCGGATCTGGAAGGATGCGAT
GACATTGCACGCCGCCATCTGGCCGAGGCGCTGAGCTACCGCGCTATGGATCGGCTACTGCTCTCCCTGCAGCGGGGCTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-143)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

58.449

99.407

0.581
  comM Vibrio campbellii strain DS40M4

57.654

99.407

0.573
  comM Haemophilus influenzae Rd KW20

57.199

100

0.573
  comM Glaesserella parasuis strain SC1401

55.49

100

0.559
  comM Legionella pneumophila str. Paris

46.894

98.617

0.462
  comM Legionella pneumophila strain ERS1305867

46.894

98.617

0.462
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.52

100

0.427

Multiple sequence alignment