Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AABD61_RS00275 Genome accession   NZ_CP150933
Coordinates   55663..57183 (-) Length   506 a.a.
NCBI ID   WP_392439794.1    Uniprot ID   -
Organism   Edwardsiella piscicida strain S07-534     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 50663..62183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABD61_RS00255 (AABD61_00255) rfaF 51071..52132 (-) 1062 WP_012846963.1 ADP-heptose--LPS heptosyltransferase RfaF -
  AABD61_RS00260 (AABD61_00260) rfaD 52156..53085 (-) 930 WP_012846964.1 ADP-glyceromanno-heptose 6-epimerase -
  AABD61_RS00265 (AABD61_00265) - 53376..54572 (+) 1197 WP_015460667.1 glycine C-acetyltransferase -
  AABD61_RS00270 (AABD61_00270) tdh 54582..55607 (+) 1026 WP_012846966.1 L-threonine 3-dehydrogenase -
  AABD61_RS00275 (AABD61_00275) comM 55663..57183 (-) 1521 WP_392439794.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AABD61_RS00280 (AABD61_00280) - 57471..58706 (+) 1236 WP_392439796.1 MFS transporter -
  AABD61_RS00285 (AABD61_00285) ilvL 58834..58932 (+) 99 WP_392440481.1 ilv operon leader peptide -
  AABD61_RS00290 (AABD61_00290) ilvG 59069..60718 (+) 1650 WP_392439798.1 acetolactate synthase 2 catalytic subunit -
  AABD61_RS00295 (AABD61_00295) ilvM 60715..61011 (+) 297 WP_392439800.1 acetolactate synthase 2 small subunit -
  AABD61_RS00300 (AABD61_00300) - 61060..61989 (+) 930 WP_012846971.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53767.11 Da        Isoelectric Point: 9.3863

>NTDB_id=973964 AABD61_RS00275 WP_392439794.1 55663..57183(-) (comM) [Edwardsiella piscicida strain S07-534]
MTLATVYTRAALGIQAPEVRIEAHIGNGLPGFTLVGLPETAVREAKDRVRCAMLNSGFQFPPKRITLNLAPADLPKEGGR
YDLPMALALLLASEQLAPRVSVGDYEFIGELALSGDLRSVQGALPAALSAARAKRTLIAPSDNAAELGLLAAPRPPVAPS
LLAVCAFLSGQASLETAPAGKMTSDCAGAGDMADIIGQAQARRALEIAAAGGHNLLLIGPPGTGKTMLACRLPGLLPPMT
PDEALEQAAISSLAYPGAMPPRYGVRPFRAPHHSASMAALIGGGPLPKPGEISLAHHGVLFLDELAEFDRRTLDALREPL
ESGVVHLSRARIKVSFPARVQLVAAMNPSSGGHADGRDRRAAPQQVLRYLSRLSGPLLDRFDLSIDVPPLSPGLLARQRA
DGEDSATLRRRVCAARARQYARGGRLNAHLEGAARDRDCRLAPDDALYLEQALTRLALSVRAWHRLLKVARTLADLEGCD
DIARRHLAEALSYRAMDRLLLSLQRG

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=973964 AABD61_RS00275 WP_392439794.1 55663..57183(-) (comM) [Edwardsiella piscicida strain S07-534]
ATGACTCTGGCCACTGTATACACGCGCGCCGCCCTGGGTATTCAAGCCCCCGAAGTCCGCATTGAGGCGCATATCGGCAA
CGGCCTACCGGGCTTTACCCTGGTGGGCCTGCCGGAAACAGCCGTACGCGAAGCCAAAGATCGGGTGCGCTGCGCCATGT
TGAACAGCGGATTTCAGTTCCCGCCGAAGCGCATTACGCTGAACCTGGCACCCGCCGATCTGCCTAAGGAAGGGGGGCGC
TACGATCTGCCGATGGCGCTGGCGCTGCTGCTGGCGTCCGAACAGCTGGCCCCACGCGTATCCGTTGGCGACTATGAATT
TATCGGCGAGCTGGCCCTGTCCGGCGATCTGCGTTCAGTACAGGGGGCGCTGCCCGCCGCGCTGAGCGCCGCCCGCGCGA
AGCGCACCCTAATAGCGCCCAGTGATAACGCGGCGGAACTCGGGCTGCTGGCAGCCCCTCGTCCCCCCGTCGCGCCGTCG
CTGCTGGCCGTCTGCGCCTTTCTGAGCGGCCAGGCATCCCTAGAGACCGCGCCGGCCGGCAAGATGACGAGCGACTGCGC
GGGCGCCGGCGATATGGCCGACATTATCGGTCAGGCGCAGGCGCGACGGGCGCTGGAGATCGCCGCCGCCGGTGGACATA
ATCTACTGCTGATCGGGCCGCCGGGCACCGGTAAAACCATGTTGGCCTGTCGCCTGCCGGGCCTGCTGCCGCCGATGACC
CCGGATGAGGCGCTAGAGCAGGCGGCCATCAGCAGCCTAGCCTACCCGGGCGCAATGCCGCCGCGCTATGGCGTGCGCCC
CTTTCGCGCGCCACACCACAGCGCCTCCATGGCCGCGCTGATCGGCGGGGGGCCGCTGCCGAAGCCCGGCGAGATCTCGC
TGGCCCATCACGGCGTCCTGTTTCTTGACGAGCTGGCCGAATTCGATCGACGAACCCTGGACGCCCTGCGCGAACCGCTG
GAGTCCGGCGTCGTCCACCTGTCTCGCGCCAGGATAAAGGTCAGCTTTCCCGCCCGAGTACAGCTGGTGGCGGCCATGAA
CCCCAGCAGCGGTGGCCACGCTGACGGACGCGATCGCCGGGCGGCGCCACAGCAGGTACTAAGATACCTCTCCCGGCTGT
CCGGCCCCCTGCTTGACCGCTTCGATCTGTCGATTGATGTGCCGCCGCTGTCACCGGGACTGCTGGCTCGCCAGCGGGCG
GATGGCGAAGACAGTGCGACTCTGCGCCGACGCGTGTGCGCCGCTCGGGCGCGGCAGTACGCCCGCGGCGGCCGGCTCAA
TGCGCATCTGGAGGGTGCCGCCCGCGATCGCGACTGCCGGCTGGCGCCGGACGATGCCCTCTATCTGGAGCAGGCGCTCA
CGCGCCTGGCGCTATCGGTACGCGCTTGGCATCGGCTGCTGAAAGTCGCACGTACGCTGGCGGATCTGGAAGGATGCGAT
GACATTGCACGCCGCCATCTGGCCGAGGCGCTGAGCTACCGCGCTATGGATCGGCTACTGCTCTCCCTGCAGCGGGGCTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-143)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

58.449

99.407

0.581
  comM Vibrio campbellii strain DS40M4

57.654

99.407

0.573
  comM Haemophilus influenzae Rd KW20

57.199

100

0.573
  comM Glaesserella parasuis strain SC1401

55.49

100

0.559
  comM Legionella pneumophila str. Paris

46.894

98.617

0.462
  comM Legionella pneumophila strain ERS1305867

46.894

98.617

0.462
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.717

100

0.429

Multiple sequence alignment