Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AABM54_RS25640 Genome accession   NZ_CP150918
Coordinates   5666200..5667693 (+) Length   497 a.a.
NCBI ID   WP_347902683.1    Uniprot ID   -
Organism   Pseudomonas purpurea strain DGS26     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5661200..5672693
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABM54_RS25610 - 5661616..5662317 (+) 702 WP_347902678.1 HAD-IA family hydrolase -
  AABM54_RS25615 sutA 5662523..5662846 (-) 324 WP_347902679.1 transcriptional regulator SutA -
  AABM54_RS25620 - 5662949..5663374 (-) 426 WP_347902680.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  AABM54_RS25625 - 5663588..5664925 (-) 1338 WP_347902681.1 ammonium transporter -
  AABM54_RS25630 glnK 5664959..5665297 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  AABM54_RS25635 - 5665697..5665960 (+) 264 WP_347902682.1 accessory factor UbiK family protein -
  AABM54_RS25640 comM 5666200..5667693 (+) 1494 WP_347902683.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AABM54_RS25645 - 5667641..5668279 (-) 639 WP_347902684.1 TetR family transcriptional regulator -
  AABM54_RS25650 - 5668394..5669317 (+) 924 WP_347902685.1 ABC transporter six-transmembrane domain-containing protein -
  AABM54_RS25655 - 5669365..5671341 (-) 1977 WP_347902686.1 methyl-accepting chemotaxis protein -
  AABM54_RS25660 - 5671529..5672449 (-) 921 WP_347902687.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53127.18 Da        Isoelectric Point: 8.1508

>NTDB_id=973794 AABM54_RS25640 WP_347902683.1 5666200..5667693(+) (comM) [Pseudomonas purpurea strain DGS26]
MSLAIVHSRAQVGVEAPAVTVEVHLANGLPALTLVGLPETAVKESKDRVRSAILNSGFQFPARRITLNLAPADLPKDGGR
FDLAIAMGLLAASVQVPTLALEDVEFLGELALSGAVRPVRGVLPAALAARKAGRTLVVPRANAEEACLASGLTVIAVDHL
LEVVAHFNGHTPLAPYVSSGLLHTSKPYPDLNEVQGQFTAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLAE
QEALEVAAILSVASHVPLSHWPQRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GQIVIARARDRVRFPARFQLVAAMNPCPCGYLGEPSGRCRCTPDQIQRYRNKLSGPLLDRIDLHLTVAREATALNPAPQP
GDDTASAAIIVAKARDRQQQRQGCANAFLDLPGLRRHCTLSTTDENWLETACERLSLSLRAAHRLLKVARTLADLEQVEG
ISREHLAEALQYRPTSA

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=973794 AABM54_RS25640 WP_347902683.1 5666200..5667693(+) (comM) [Pseudomonas purpurea strain DGS26]
ATGTCTCTGGCCATCGTCCACAGCCGCGCCCAGGTTGGCGTGGAGGCGCCTGCCGTTACTGTCGAAGTGCATTTGGCCAA
TGGCTTGCCGGCGCTGACCCTCGTCGGGCTGCCCGAAACAGCGGTCAAGGAAAGCAAGGATCGGGTGCGCAGTGCGATTC
TCAACTCGGGTTTCCAGTTCCCCGCACGGCGCATCACGCTGAATCTCGCACCCGCGGATTTGCCCAAGGACGGTGGGCGA
TTCGATTTGGCGATCGCGATGGGCCTGTTGGCAGCCAGCGTGCAAGTGCCGACCCTCGCGCTCGAAGACGTGGAGTTTCT
GGGCGAGTTGGCGCTCTCCGGCGCGGTTCGACCGGTGCGGGGCGTGTTACCCGCCGCACTGGCGGCGCGCAAGGCCGGGC
GTACGCTGGTGGTGCCTCGGGCCAATGCCGAAGAGGCCTGCCTGGCCTCGGGGCTGACGGTGATCGCGGTCGACCACCTG
CTGGAAGTGGTCGCCCACTTCAACGGCCATACACCCCTTGCACCGTACGTGTCCAGCGGCTTGCTGCATACCAGCAAACC
CTATCCCGACTTGAATGAAGTTCAGGGGCAGTTCACGGCCAAACGCGCCTTGCTGATCGCCGCGGCGGGGGCTCATAACC
TGTTGTTCAGCGGCCCGCCGGGTACCGGCAAAACCCTGCTCGCCAGCCGCTTGCCGGGGCTGTTGCCGCCCCTGGCAGAA
CAGGAAGCGCTGGAGGTGGCGGCCATTTTGTCGGTGGCCAGCCATGTGCCGCTGAGCCACTGGCCGCAGCGACCGTTTCG
CCAGCCGCACCATTCGGCCTCAGGCCCGGCGCTGGTCGGCGGCGGCTCAAAACCACAACCGGGGGAAATCACCCTCGCCC
ACCACGGTGTGCTGTTTCTGGATGAATTGCCGGAGTTCGACCGCAAAGTGCTGGAGGTGTTAAGAGAGCCGCTGGAGTCC
GGCCAGATTGTGATCGCCCGGGCCCGCGACCGCGTGCGGTTCCCGGCGCGCTTTCAATTGGTCGCCGCGATGAACCCCTG
CCCCTGTGGATATCTTGGTGAACCAAGTGGGCGCTGCCGCTGCACGCCAGATCAGATTCAGCGCTATCGCAACAAACTCT
CAGGCCCGCTGCTGGACCGCATCGACCTGCACCTGACCGTCGCCCGTGAAGCCACGGCCCTGAACCCGGCACCACAACCC
GGCGATGACACCGCCAGCGCGGCGATCATCGTGGCCAAGGCGCGAGACCGGCAACAGCAACGCCAGGGTTGCGCCAATGC
CTTCCTCGACCTGCCCGGCCTGCGTCGCCACTGCACGTTATCCACAACCGACGAAAACTGGCTGGAGACGGCATGCGAGC
GGCTGAGCTTGTCGCTGCGCGCCGCCCATCGCCTGCTCAAAGTCGCGCGCACGCTGGCAGACCTTGAACAGGTGGAGGGG
ATCAGTCGAGAGCATCTGGCGGAAGCGTTGCAGTACCGGCCGACAAGCGCATGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

56.768

99.598

0.565
  comM Vibrio cholerae strain A1552

55.96

99.598

0.557
  comM Haemophilus influenzae Rd KW20

55.2

100

0.555
  comM Glaesserella parasuis strain SC1401

53.8

100

0.541
  comM Legionella pneumophila str. Paris

50.403

99.799

0.503
  comM Legionella pneumophila strain ERS1305867

50.403

99.799

0.503
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.527

100

0.461

Multiple sequence alignment