Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AABM55_RS01910 Genome accession   NZ_CP150917
Coordinates   428457..429521 (+) Length   354 a.a.
NCBI ID   WP_347928675.1    Uniprot ID   -
Organism   Pseudomonas helvetica strain DGS28     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 423457..434521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABM55_RS01900 - 423527..424795 (+) 1269 WP_054595225.1 malic enzyme-like NAD(P)-binding protein -
  AABM55_RS01905 - 425802..428243 (-) 2442 WP_347928674.1 penicillin-binding protein 1A -
  AABM55_RS01910 comM 428457..429521 (+) 1065 WP_347928675.1 pilus assembly protein PilM Machinery gene
  AABM55_RS01915 - 429521..430087 (+) 567 WP_103317115.1 PilN domain-containing protein -
  AABM55_RS01920 pilO 430084..430707 (+) 624 WP_347928676.1 type 4a pilus biogenesis protein PilO -
  AABM55_RS01925 - 430704..431231 (+) 528 WP_347928677.1 pilus assembly protein PilP -
  AABM55_RS01930 pilQ 431245..433326 (+) 2082 WP_347928678.1 type IV pilus secretin PilQ Machinery gene
  AABM55_RS01935 aroK 433331..433849 (+) 519 WP_054595232.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38103.68 Da        Isoelectric Point: 4.7438

>NTDB_id=973742 AABM55_RS01910 WP_347928675.1 428457..429521(+) (comM) [Pseudomonas helvetica strain DGS28]
MLGLFNKKSRTLLGIDISSTSVKLLELSRAGNRYRVEAYAVEPLPTNAVVEKNIAELEGVGQALSRVLLKAKTSVKSVAV
AVAGSAVITKIIEMDAGLSPDEMENQLKIEADQYIPYPLEEVAIDFEVQGASRRNPERVDVLLAACRKENVEVREAALAL
AGLTAQVVDVEAYALERSFGLLTAQLAGVTERSTVAVVDIGATMTTLSVLSNGRIIYTREQLFGGRQLTEEIQRRYGMTV
EQAGLGKKQGGLPEDYVSEVLQPFREALVQQVSRSLQFFFASGQYNAIDYILLAGGTASVTGLDRLIEQRLGTPTQVANP
FADMTLSSKVNASALASDAPALMIACGLALRSFD

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=973742 AABM55_RS01910 WP_347928675.1 428457..429521(+) (comM) [Pseudomonas helvetica strain DGS28]
GTGCTGGGACTCTTCAATAAAAAAAGCCGCACGCTTTTGGGGATCGATATCAGCTCCACTTCGGTGAAGCTTCTCGAGCT
AAGCCGTGCAGGCAATCGATACCGGGTCGAAGCCTACGCGGTAGAGCCGCTGCCGACCAACGCCGTGGTCGAGAAAAATA
TCGCCGAACTCGAAGGCGTCGGGCAGGCGTTGTCCCGGGTGTTGCTCAAGGCCAAAACCAGCGTCAAGAGTGTCGCGGTG
GCGGTTGCCGGATCGGCGGTCATCACCAAGATCATCGAAATGGACGCCGGGCTTTCCCCCGATGAAATGGAAAATCAGCT
GAAGATTGAAGCTGACCAGTACATCCCCTATCCCCTCGAAGAAGTCGCCATCGATTTTGAAGTGCAGGGCGCCTCCCGGC
GTAATCCCGAGCGGGTCGACGTATTGCTGGCGGCCTGTCGCAAGGAAAACGTCGAAGTTCGCGAAGCTGCGCTGGCCCTT
GCCGGCCTGACCGCACAGGTCGTCGATGTCGAGGCGTACGCGCTGGAGCGTTCATTCGGCTTGCTGACGGCACAGTTGGC
CGGCGTGACCGAGCGTTCGACGGTGGCCGTGGTCGACATCGGCGCCACCATGACCACCTTGAGCGTGCTGTCCAACGGCC
GAATCATCTACACCCGCGAGCAGTTGTTCGGCGGTCGTCAGTTGACGGAGGAAATCCAGCGCCGCTATGGCATGACGGTT
GAGCAGGCCGGTCTTGGAAAAAAACAGGGTGGCTTGCCTGAAGACTACGTCAGCGAAGTCCTGCAACCGTTCCGCGAGGC
GCTGGTGCAGCAGGTTTCGCGATCGTTGCAGTTCTTTTTCGCCTCGGGTCAGTACAACGCGATCGACTACATCCTGCTGG
CCGGTGGCACAGCCTCGGTCACCGGGCTGGATCGACTGATCGAGCAGCGCCTGGGCACGCCGACGCAGGTGGCCAATCCG
TTTGCGGACATGACATTGAGCAGCAAGGTCAACGCCAGTGCCCTGGCCAGTGATGCGCCGGCGCTGATGATTGCCTGCGG
CCTGGCGCTGAGGAGTTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter baylyi ADP1

55.211

100

0.554
  pilM Acinetobacter baumannii D1279779

54.237

100

0.542
  comM Acinetobacter nosocomialis M2

54.237

100

0.542
  pilM Legionella pneumophila strain ERS1305867

46.61

100

0.466

Multiple sequence alignment