Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   WN982_RS18545 Genome accession   NZ_CP150900
Coordinates   4078378..4079961 (+) Length   527 a.a.
NCBI ID   WP_341313361.1    Uniprot ID   A0AAU6QL33
Organism   Paraburkholderia sp. IMGN_8 strain SJ_3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4073378..4084961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WN982_RS18525 (WN982_18525) gshA 4074179..4075468 (-) 1290 WP_341313359.1 glutamate--cysteine ligase -
  WN982_RS18530 (WN982_18530) - 4075700..4077217 (-) 1518 WP_341313360.1 ammonium transporter -
  WN982_RS18535 (WN982_18535) - 4077262..4077600 (-) 339 WP_006048089.1 P-II family nitrogen regulator -
  WN982_RS18540 (WN982_18540) - 4077997..4078254 (+) 258 WP_154564624.1 accessory factor UbiK family protein -
  WN982_RS18545 (WN982_18545) comM 4078378..4079961 (+) 1584 WP_341313361.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  WN982_RS18550 (WN982_18550) - 4080294..4080953 (-) 660 WP_341315840.1 hypothetical protein -
  WN982_RS18555 (WN982_18555) - 4081124..4081654 (+) 531 WP_341313362.1 TlpA disulfide reductase family protein -
  WN982_RS18560 (WN982_18560) - 4081730..4083082 (-) 1353 WP_341313363.1 sigma-54 dependent transcriptional regulator -

Sequence

Protein


Download         Length: 527 a.a.        Molecular weight: 55303.11 Da        Isoelectric Point: 7.8609

>NTDB_id=973622 WN982_RS18545 WP_341313361.1 4078378..4079961(+) (comM) [Paraburkholderia sp. IMGN_8 strain SJ_3]
MSLAVVRSRAPASGRAPEVTVEVHLANGLPSFSIVGLPDLEVRESRERVRAALQNCGFDFPVRRITVNLAPADLPKESGR
FDLPIALGILAASGQIPAESLLHREFAGELSLTGALRPMRGAFAMACGTARSGASNGASITAGEQSAAGTPARHAAQLYL
PAASAAEAALVPGVDVYGAADLPSLCAHLAEAPDARLYPVTAPDLTESAPVVVPDMADVIGQRGARRALEVAAAGGHHVL
MVGPPGAGKSMLAARLPSLLPPMTDDEALSSAALLSASRSGFTPSQWRQRPFRAPHHSSSAAALVGGRNPPQPGEITLAH
LGVLFLDELPEFDRHVLETLREPLEAGRITISRAALQADFPAACQLIAAMNPCPCGWRGDPNGRCRCTPEIAARYLRKLS
GPLVDRIDIQIEIPALGAAELSARKTVSAEASAAIAERVGAARARQLARQGKTNRELGGREVDDVCRPDTAGEALLREAG
ERFRWSARAYYRVLKVARTIADLAGEATPSAAQIGEAIQYRRAFGSV

Nucleotide


Download         Length: 1584 bp        

>NTDB_id=973622 WN982_RS18545 WP_341313361.1 4078378..4079961(+) (comM) [Paraburkholderia sp. IMGN_8 strain SJ_3]
ATGTCGCTTGCCGTGGTGCGCAGTCGCGCGCCGGCCTCTGGCCGCGCGCCTGAAGTAACCGTCGAGGTTCACCTCGCGAA
CGGATTACCCTCCTTTTCGATCGTCGGCCTTCCTGATCTGGAAGTGCGCGAAAGCCGCGAGCGCGTGCGCGCGGCGCTGC
AGAACTGCGGCTTCGATTTCCCTGTCCGGCGCATCACAGTCAATCTCGCTCCCGCCGATTTGCCGAAAGAGTCCGGCCGC
TTCGACCTGCCGATCGCGCTGGGCATTCTGGCGGCAAGCGGGCAGATTCCGGCGGAATCGTTACTGCACCGTGAATTTGC
CGGCGAACTGTCGCTGACCGGCGCGCTGCGACCCATGCGCGGCGCTTTCGCGATGGCCTGCGGGACGGCGCGCAGCGGCG
CTTCTAACGGCGCCTCTATTACTGCGGGCGAGCAGTCGGCGGCAGGGACGCCAGCTCGGCACGCCGCGCAGCTTTATCTT
CCAGCCGCCAGCGCCGCGGAAGCCGCGCTTGTACCCGGCGTCGATGTCTACGGCGCCGCCGATCTGCCGTCGCTGTGCGC
CCATCTGGCCGAAGCACCCGACGCCCGGCTCTATCCTGTCACCGCGCCCGACCTTACCGAGAGCGCGCCCGTGGTGGTCC
CCGACATGGCCGACGTGATCGGCCAGCGCGGCGCGCGCCGCGCACTCGAGGTCGCCGCCGCCGGCGGTCATCACGTCCTG
ATGGTGGGACCGCCCGGCGCGGGCAAATCGATGCTTGCCGCGCGCCTGCCAAGCCTGCTCCCGCCGATGACCGACGATGA
GGCGCTCAGCTCCGCCGCCTTGCTGTCAGCCAGCCGGTCCGGCTTTACGCCTTCCCAGTGGCGGCAACGGCCATTTCGCG
CGCCGCATCACTCATCGAGCGCGGCTGCGCTGGTCGGCGGACGCAATCCACCGCAACCCGGCGAAATCACGCTGGCACAT
CTGGGCGTGCTGTTCCTCGACGAACTGCCGGAATTCGACCGTCATGTGCTGGAAACGCTGCGTGAGCCGCTCGAAGCGGG
CCGCATCACGATTTCGCGCGCGGCGTTGCAAGCGGATTTCCCGGCGGCCTGCCAATTGATAGCCGCCATGAATCCCTGTC
CGTGCGGATGGCGCGGCGACCCCAACGGCCGTTGCCGTTGCACGCCGGAGATTGCGGCGCGCTATCTGCGCAAGCTGTCT
GGGCCGCTGGTCGACCGGATCGATATCCAGATCGAGATTCCCGCGCTTGGCGCCGCAGAACTGTCCGCGCGCAAGACAGT
CAGCGCAGAAGCGAGCGCGGCGATAGCGGAAAGGGTAGGCGCGGCGCGAGCGCGGCAACTGGCACGCCAGGGCAAAACCA
ATCGCGAACTGGGGGGGCGTGAAGTAGACGACGTTTGCCGCCCCGACACAGCCGGTGAAGCATTGTTGCGCGAAGCAGGC
GAGCGCTTCAGATGGTCAGCGCGCGCTTACTACCGGGTCCTGAAGGTGGCCCGGACCATCGCCGACCTTGCAGGGGAAGC
TACGCCAAGTGCTGCGCAGATCGGCGAAGCGATCCAATATCGGCGGGCTTTTGGCTCCGTATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(215-419)

Subunit ChlI of Mg-chelatase (ChlI)

(21-134)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(430-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

48.467

99.051

0.48
  comM Vibrio campbellii strain DS40M4

47.793

98.861

0.472
  comM Legionella pneumophila str. Paris

46.756

99.431

0.465
  comM Legionella pneumophila strain ERS1305867

46.756

99.431

0.465
  comM Haemophilus influenzae Rd KW20

46.388

99.81

0.463
  comM Glaesserella parasuis strain SC1401

45.785

99.051

0.454
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.212

99.241

0.429

Multiple sequence alignment