Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   WOB24_RS00875 Genome accession   NZ_CP150891
Coordinates   191965..193464 (-) Length   499 a.a.
NCBI ID   WP_341304286.1    Uniprot ID   -
Organism   Pseudomonas sp. TMP25     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 186965..198464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WOB24_RS00850 (WOB24_00850) - 187596..188261 (+) 666 WP_339080829.1 fumarylacetoacetate hydrolase family protein -
  WOB24_RS00855 (WOB24_00855) - 188382..189311 (+) 930 WP_339080830.1 SdiA-regulated domain-containing protein -
  WOB24_RS00860 (WOB24_00860) - 189395..189742 (+) 348 WP_339080831.1 NirD/YgiW/YdeI family stress tolerance protein -
  WOB24_RS00865 (WOB24_00865) - 189840..190763 (+) 924 WP_339080832.1 SdiA-regulated domain-containing protein -
  WOB24_RS00870 (WOB24_00870) - 191124..191912 (+) 789 WP_341304285.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  WOB24_RS00875 (WOB24_00875) comM 191965..193464 (-) 1500 WP_341304286.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  WOB24_RS00880 (WOB24_00880) - 193504..193773 (-) 270 WP_339080841.1 accessory factor UbiK family protein -
  WOB24_RS00885 (WOB24_00885) glnK 194199..194537 (+) 339 WP_021700071.1 P-II family nitrogen regulator -
  WOB24_RS00890 (WOB24_00890) - 194574..195887 (+) 1314 WP_341304287.1 ammonium transporter -
  WOB24_RS00895 (WOB24_00895) - 195966..197216 (+) 1251 WP_341304288.1 ammonium transporter -
  WOB24_RS00900 (WOB24_00900) sutA 197471..197800 (+) 330 WP_341304289.1 transcriptional regulator SutA -

Sequence

Protein


Download         Length: 499 a.a.        Molecular weight: 52620.50 Da        Isoelectric Point: 7.9374

>NTDB_id=973513 WOB24_RS00875 WP_341304286.1 191965..193464(-) (comM) [Pseudomonas sp. TMP25]
MSLAIVHSRAQVGVEAPAVTVEAHLANGLPSLALVGLPETAVKESKDRVRSAILNCAFDFPPRRITLNLAPADLPKDGGR
FDLAIALGILAASGQVPAAALEHLECLGELALSGAIRPVQGVLPAALAARAAGRTLVVPKANAEEASLASGLTVIAVEHL
LEVAAHLNGQTPIAPYQAHGLLRHVLPYPDLAEVQGQIAAKRALLVAAAGSHNLLFTGPPGTGKTLLASRLPGLLPPLNE
AEALEVAAIHSVASHTPLSAWPQRPFRTPHHSASGPALVGGGSRPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GQIVIARARDKVRFPARFQLVAAMNPCPCGHLGDPSGRCRCSSEQVQRYRSKLSGPLLDRIDLHLTVPRETTRLNASAEP
GPSSAELAALVIQARQQQLDRQGCANAHLDLNGVKQHCSLPDADRQWLENACERLGLSLRAAHRVLKVARTLADLDGAVP
ISRAHLAEALQYRPSGSGA

Nucleotide


Download         Length: 1500 bp        

>NTDB_id=973513 WOB24_RS00875 WP_341304286.1 191965..193464(-) (comM) [Pseudomonas sp. TMP25]
ATGTCTCTGGCTATAGTCCACAGCCGCGCGCAAGTCGGCGTTGAAGCCCCTGCTGTTACCGTCGAAGCTCACTTGGCTAA
CGGCCTGCCATCACTGGCACTGGTCGGCCTGCCGGAAACAGCAGTCAAGGAAAGCAAGGACCGGGTGCGAAGCGCCATTC
TCAATTGCGCCTTCGACTTCCCGCCCCGACGTATCACCCTGAATCTGGCTCCGGCCGACCTGCCTAAAGATGGCGGCCGC
TTCGACCTGGCGATTGCCCTTGGCATCCTTGCCGCCAGCGGTCAGGTACCGGCGGCAGCGCTGGAACACCTCGAATGCTT
GGGTGAGCTGGCGCTCTCCGGGGCCATACGCCCCGTGCAGGGCGTGTTGCCGGCGGCACTGGCCGCCCGCGCAGCCGGGC
GCACCTTAGTGGTGCCCAAGGCCAATGCTGAGGAAGCCAGCCTCGCCTCGGGGCTCACCGTGATTGCCGTCGAACACCTG
CTGGAAGTCGCCGCGCACCTTAATGGGCAAACACCGATCGCGCCTTATCAAGCTCATGGCTTGTTGCGTCACGTGCTGCC
CTATCCGGACTTAGCCGAAGTGCAGGGGCAAATTGCCGCCAAACGTGCGTTGCTGGTGGCGGCGGCGGGTTCGCACAACC
TGCTGTTTACCGGCCCGCCCGGCACCGGCAAAACCTTACTGGCCAGCCGCCTGCCGGGCTTACTGCCACCGCTGAACGAG
GCAGAAGCGCTGGAAGTTGCGGCGATTCATTCAGTTGCCAGCCACACGCCTCTGAGCGCCTGGCCACAACGACCATTCCG
CACCCCGCATCACAGCGCGTCGGGGCCGGCGCTGGTCGGTGGCGGTAGCCGTCCGCAGCCGGGCGAAATTACCTTGGCCC
ATCACGGCGTGTTATTTCTTGATGAGCTTCCTGAGTTTGATCGAAAGGTTTTAGAAGTCTTACGAGAGCCCCTAGAAAGC
GGCCAAATTGTCATCGCCCGCGCCCGCGACAAGGTGCGCTTCCCGGCGCGCTTTCAGCTAGTCGCGGCAATGAACCCCTG
CCCCTGCGGGCATTTGGGTGACCCGTCCGGTCGTTGTCGTTGCAGCAGCGAGCAGGTGCAGCGCTACCGCAGCAAACTCT
CCGGCCCGCTGCTTGATCGTATCGACCTGCACCTTACCGTACCGCGCGAGACCACCCGCCTTAACGCCAGCGCTGAGCCA
GGCCCAAGCAGCGCTGAACTGGCCGCCCTGGTTATTCAAGCACGCCAGCAGCAACTGGATCGCCAAGGCTGCGCCAATGC
GCATTTGGATTTAAACGGGGTAAAGCAGCATTGCAGCCTGCCTGACGCAGACCGCCAATGGCTGGAGAATGCCTGCGAAC
GCCTAGGCCTGAGCTTGCGCGCGGCGCACCGCGTGCTGAAGGTCGCACGTACCTTGGCCGATCTAGACGGTGCTGTACCT
ATCAGCCGCGCTCATCTGGCTGAGGCGTTGCAATACCGCCCCAGCGGCAGCGGGGCCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

55.467

100

0.559
  comM Vibrio cholerae strain A1552

55.96

99.198

0.555
  comM Glaesserella parasuis strain SC1401

54.709

100

0.547
  comM Haemophilus influenzae Rd KW20

54.4

100

0.545
  comM Legionella pneumophila str. Paris

48.126

100

0.489
  comM Legionella pneumophila strain ERS1305867

48.126

100

0.489
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.614

100

0.469

Multiple sequence alignment