Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   WJM97_RS19235 Genome accession   NZ_CP150886
Coordinates   4390018..4390383 (+) Length   121 a.a.
NCBI ID   WP_353930379.1    Uniprot ID   -
Organism   Okeanomitos corallinicola TIOX110     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4385018..4395383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WJM97_RS19215 (WJM97_19130) - 4385037..4385360 (+) 324 WP_353930375.1 KGK domain-containing protein -
  WJM97_RS19220 (WJM97_19135) tilS 4385459..4386439 (+) 981 WP_353930376.1 tRNA lysidine(34) synthetase TilS -
  WJM97_RS19225 (WJM97_19140) hmpF 4386473..4388233 (-) 1761 WP_353930377.1 pilus motility taxis protein HmpF -
  WJM97_RS19230 (WJM97_19145) - 4388617..4389822 (+) 1206 WP_353930378.1 response regulator -
  WJM97_RS19235 (WJM97_19150) pilH 4390018..4390383 (+) 366 WP_353930379.1 response regulator Machinery gene
  WJM97_RS19240 (WJM97_19155) - 4390397..4390957 (+) 561 WP_353930380.1 chemotaxis protein CheW -
  WJM97_RS19245 (WJM97_19160) - 4390974..4393958 (+) 2985 WP_353930381.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13376.56 Da        Isoelectric Point: 5.1746

>NTDB_id=973466 WJM97_RS19235 WP_353930379.1 4390018..4390383(+) (pilH) [Okeanomitos corallinicola TIOX110]
MSTVLIVEDSIAQREMITDLLKASGLKVNHAGDGVEALEAIQLTPPDLVVLDIVMPRMNGYELCRRLKSDPKTQNVPVVM
CSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLLRG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=973466 WJM97_RS19235 WP_353930379.1 4390018..4390383(+) (pilH) [Okeanomitos corallinicola TIOX110]
ATGAGTACAGTTCTGATTGTCGAAGATAGTATTGCCCAAAGGGAGATGATCACCGATCTTCTCAAAGCCAGTGGCTTAAA
AGTTAATCATGCTGGTGATGGAGTAGAAGCTTTAGAAGCTATTCAACTAACACCACCGGATCTAGTAGTTTTAGATATTG
TCATGCCTAGAATGAACGGATACGAACTATGTCGGCGCTTAAAATCCGATCCCAAAACCCAAAACGTCCCCGTAGTCATG
TGTTCTTCCAAAGGAGAAGAATTTGATCGCTACTGGGGGATGAAACAGGGAGCAGATGCTTACATAGCCAAACCATTTCA
ACCAACGGAATTGGTAGGAACAGTTAAACAACTGCTGCGGGGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

76.033

100

0.76
  pilL-C Synechocystis sp. PCC 6803

38.017

100

0.38
  pilG Acinetobacter baumannii strain A118

40.351

94.215

0.38
  micA Streptococcus pneumoniae Cp1015

38.333

99.174

0.38
  vicR Streptococcus mutans UA159

37.5

99.174

0.372

Multiple sequence alignment