Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   WMZ02_RS16260 Genome accession   NZ_CP150864
Coordinates   3448178..3449701 (-) Length   507 a.a.
NCBI ID   WP_346338102.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain NJIFDCVp7     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3443178..3454701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WMZ02_RS16240 (WMZ02_16240) - 3444460..3445446 (+) 987 WP_267426758.1 serine/threonine protein kinase -
  WMZ02_RS16245 (WMZ02_16245) - 3445481..3446083 (+) 603 WP_025551223.1 thiol:disulfide interchange protein DsbA/DsbL -
  WMZ02_RS16250 (WMZ02_16250) - 3446125..3446994 (-) 870 WP_033908198.1 acyltransferase -
  WMZ02_RS16255 (WMZ02_16255) - 3447165..3448121 (+) 957 WP_025636110.1 DUF2860 domain-containing protein -
  WMZ02_RS16260 (WMZ02_16260) comM 3448178..3449701 (-) 1524 WP_346338102.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  WMZ02_RS16265 (WMZ02_16265) ilvG 3450166..3451812 (+) 1647 WP_005461385.1 acetolactate synthase 2 catalytic subunit -
  WMZ02_RS16270 (WMZ02_16270) ilvM 3451823..3452107 (+) 285 WP_005378958.1 acetolactate synthase 2 small subunit -
  WMZ02_RS16275 (WMZ02_16275) ilvE 3452120..3453058 (+) 939 WP_023584686.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54986.11 Da        Isoelectric Point: 8.7667

>NTDB_id=973195 WMZ02_RS16260 WP_346338102.1 3448178..3449701(-) (comM) [Vibrio parahaemolyticus strain NJIFDCVp7]
MGLAIIHSRASVGVQAPSVGVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIINSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQIATDRLKNYEFVGELALSGGLRPVKGVLPAALAASKVGRHLVVPHVNGDQAALVGKEKHKSAQSL
LEVCAELCGQHRLNLYQTPKRKTVEKHGRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
EEAMETASVASLTQSEINEHNWKSRPFRAPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFDRKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARTNPQAILRYLGRLSGPLLDRFDMSLEIPSLPKGTLAEGGER
GEPTELVKERVSLARESMLNRNGKVNALLGSREIEAFCPLQKSDAEFLETALHRLGLSIRAYHRIIKVARTIADLEGAEQ
IERPHLAEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=973195 WMZ02_RS16260 WP_346338102.1 3448178..3449701(-) (comM) [Vibrio parahaemolyticus strain NJIFDCVp7]
ATGGGGCTGGCAATCATTCATAGTCGGGCAAGTGTCGGGGTGCAAGCACCGTCAGTTGGTGTGGAAGTGCATATCAGTAA
TGGCATGCCCGGCTTTACTCTCGTTGGGTTGCCGGAGACTACGGTAAAGGAATCCAAAGATCGTGTACGCAGTGCGATCA
TCAATTCAAATTTCCAGTTTCCAGCCAAGCGCATTACGGTCAATTTGGCCCCGGCGGATTTACCTAAAGAAGGCGGACGT
TTTGATTTGCCTATCGCATTGGGTATTTTGGCGGCTTCAGAGCAAATCGCGACAGATAGGCTCAAAAACTACGAATTTGT
TGGCGAATTAGCCCTGTCTGGAGGATTAAGACCTGTTAAAGGTGTGCTTCCTGCCGCGTTGGCTGCAAGCAAAGTAGGAC
GTCATTTGGTGGTGCCTCATGTCAATGGCGATCAAGCGGCGTTGGTGGGCAAAGAGAAACATAAGTCAGCGCAATCCTTA
CTTGAGGTGTGTGCGGAGTTATGTGGTCAGCATCGTCTCAATCTTTATCAAACTCCGAAGCGAAAAACGGTTGAAAAACA
TGGTCGAGATCTACAAGACATCATTGGGCAGCAACAAGGAAAGCGTGCTCTAGAAATTGCGGCGGCTGGAAACCACAACC
TACTTTTCCTTGGTCCTCCTGGTACAGGAAAAACCATGCTGGCGTCGCGTTTATGCGACTTACTGCCGGAGATGAGCGAC
GAAGAAGCGATGGAAACGGCTTCAGTCGCATCACTGACGCAAAGTGAGATTAATGAGCACAACTGGAAGTCGCGTCCGTT
TCGTGCGCCGCACCATTCCAGTTCGATGGCGGCATTAGTTGGTGGTGGCTCGGTGCCAAGACCGGGAGAGATTTCTTTGG
CTCACAATGGGTTATTGTTCCTTGATGAAATGCCGGAGTTTGACCGTAAAGTGTTGGACTCATTACGAGAACCACTGGAG
TCGGGTGAGATCATCATTTCGCGCGCACAAGGAAAAACGCGTTTTCCTGCTCGTTTTCAGCTGGTGGGCGCGTTGAATCC
AAGCCCAACTGGCTATTACGAAGGGAATCAAGCTCGCACTAACCCTCAAGCTATTTTGCGTTACTTAGGTCGTTTATCGG
GACCGCTTCTCGACCGTTTTGATATGTCGTTAGAAATTCCATCCTTACCAAAAGGCACGTTGGCGGAAGGTGGTGAGCGA
GGTGAACCCACGGAACTCGTCAAAGAGCGCGTCAGTCTTGCTCGCGAGAGCATGCTCAATCGAAACGGCAAAGTAAACGC
ACTGCTTGGCAGCCGTGAGATTGAGGCATTTTGTCCGTTGCAAAAAAGCGATGCGGAGTTTCTCGAAACTGCACTCCATC
GGCTGGGATTATCGATTCGTGCCTATCATCGCATCATTAAAGTAGCCCGTACGATAGCGGATTTAGAAGGTGCTGAGCAG
ATTGAGCGGCCTCATCTGGCTGAAGCTTTGGGGTATCGCGCGATGGACCGATTGCTGAAACAACTCACGGCTCAAGCCGT
GTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

93.688

100

0.937
  comM Vibrio cholerae strain A1552

84.813

100

0.848
  comM Haemophilus influenzae Rd KW20

66.272

100

0.663
  comM Glaesserella parasuis strain SC1401

64.118

100

0.645
  comM Legionella pneumophila str. Paris

49.798

97.83

0.487
  comM Legionella pneumophila strain ERS1305867

49.798

97.83

0.487
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.094

100

0.442

Multiple sequence alignment