Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OO938_RS01435 Genome accession   NZ_AP026873
Coordinates   311273..311797 (+) Length   174 a.a.
NCBI ID   WP_008503384.1    Uniprot ID   A0A156LWB5
Organism   Enterobacter roggenkampii strain KAM546     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 306273..316797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OO938_RS01415 (KAM546c_02770) aphA 306596..307309 (+) 714 WP_021242762.1 acid phosphatase AphA -
  OO938_RS01420 (KAM546c_02780) - 307423..307839 (+) 417 WP_023293516.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  OO938_RS01425 (KAM546c_02790) - 307842..308195 (+) 354 WP_008503382.1 MmcQ/YjbR family DNA-binding protein -
  OO938_RS01430 (KAM546c_02800) uvrA 308199..311021 (-) 2823 WP_008503383.1 excinuclease ABC subunit UvrA -
  OO938_RS01435 (KAM546c_02810) ssb 311273..311797 (+) 525 WP_008503384.1 single-stranded DNA-binding protein SSB1 Machinery gene
  OO938_RS01440 (KAM546c_02820) - 311861..312142 (-) 282 WP_008503385.1 YjcB family protein -
  OO938_RS01445 (KAM546c_02830) - 312778..313212 (+) 435 Protein_281 CSS-motif domain-containing protein -
  OO938_RS01450 - 313268..313965 (+) 698 WP_223814698.1 IS1 family transposase -
  OO938_RS01455 - 313983..315118 (+) 1136 Protein_283 EAL domain-containing protein -
  OO938_RS01460 (KAM546c_02890) soxS 315125..315451 (-) 327 WP_008503387.1 superoxide response transcriptional regulator SoxS -
  OO938_RS01465 (KAM546c_02900) soxR 315550..316008 (+) 459 WP_008503388.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18593.60 Da        Isoelectric Point: 5.2456

>NTDB_id=97310 OO938_RS01435 WP_008503384.1 311273..311797(+) (ssb) [Enterobacter roggenkampii strain KAM546]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=97310 OO938_RS01435 WP_008503384.1 311273..311797(+) (ssb) [Enterobacter roggenkampii strain KAM546]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCAGAAGTGGCCGGTGAGTATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAACTGCGTACCCGCAAATGGACCGATCAGTCCGGTGCTGAGAAGTACACCACTGAAGTCGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGTGGTGCACCAGCAGGTGGCGGCCAGCAGCAGGGCGGTTGGGGTC
AGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGCAGTCTGCTCCGGCGCCG
TCTAACGAACCGCCAATGGATTTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A156LWB5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.111

100

0.787
  ssb Glaesserella parasuis strain SC1401

57.377

100

0.603
  ssb Neisseria meningitidis MC58

47.191

100

0.483
  ssb Neisseria gonorrhoeae MS11

47.191

100

0.483
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.556

100

0.368

Multiple sequence alignment