Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   AAAF57_RS02940 Genome accession   NZ_CP150847
Coordinates   573496..574989 (+) Length   497 a.a.
NCBI ID   WP_155213238.1    Uniprot ID   A0AB35IV63
Organism   Streptococcus salivarius strain KSS5     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 568496..579989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAAF57_RS02930 (AAAF57_02930) amiA 569313..571283 (+) 1971 WP_013990223.1 peptide ABC transporter substrate-binding protein Regulator
  AAAF57_RS02935 (AAAF57_02935) amiA 571465..573435 (+) 1971 WP_013990224.1 peptide ABC transporter substrate-binding protein Regulator
  AAAF57_RS02940 (AAAF57_02940) amiC 573496..574989 (+) 1494 WP_155213238.1 ABC transporter permease Regulator
  AAAF57_RS02945 (AAAF57_02945) amiD 574989..575915 (+) 927 WP_002884564.1 oligopeptide ABC transporter permease OppC Regulator
  AAAF57_RS02950 (AAAF57_02950) amiE 575925..577010 (+) 1086 WP_048673696.1 ABC transporter ATP-binding protein Regulator
  AAAF57_RS02955 (AAAF57_02955) amiF 577003..577932 (+) 930 WP_064519003.1 ATP-binding cassette domain-containing protein Regulator
  AAAF57_RS02960 (AAAF57_02960) - 577984..578769 (-) 786 WP_410536944.1 ABC transporter permease -
  AAAF57_RS02965 (AAAF57_02965) - 578781..579479 (-) 699 WP_002884466.1 ABC transporter ATP-binding protein -
  AAAF57_RS02970 (AAAF57_02970) - 579484..579861 (-) 378 WP_002884206.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 55920.66 Da        Isoelectric Point: 9.9550

>NTDB_id=972955 AAAF57_RS02940 WP_155213238.1 573496..574989(+) (amiC) [Streptococcus salivarius strain KSS5]
MKKYILLRTLRSLLSIFVVTALTYTIIYTMVPRRLIFRQDPNYNKIAKTADSKANYENTIYERMGYIDYYDTKELQEKAS
SLDKSVTTKPTKENKAIYQKYVDSLGHGWRLHQFKQSKQFYATRDVPVLERVFGFYTHLFEFDNTGWVKDKTNPNLKRYI
RIENDPAIGWSVVGSGTKHKYLLYFNSQFPFVHQNFVKMNLGTSYPTYAEQGVLDVITQGQGQTQSSEVNFPTGKKVSSV
DIYSRTYKSPSQADARDRSYYGDDPYTATKSRYQYPSMVTSSAIAGLIGLVLSYALAIPLGSYMARFKNTLFDSISTGVL
TFLLSLPTIALVYIIRLIGSEIGLPDSFPILGAGDWRSYVLPSVILGLLSTPGLAIWIRRYMIDLQSQDFVRFARAKGLS
EQEISNKHIFKNAMVSLVSGIPASIVSVITGATLTETIFAYPGMGKMLIDSVRASNNAMVVGLVFIFTALTIFSLLVGDI
LMTMIDPRIKLTSKGGK

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=972955 AAAF57_RS02940 WP_155213238.1 573496..574989(+) (amiC) [Streptococcus salivarius strain KSS5]
ATGAAAAAATACATTTTATTGAGAACCCTCCGTTCTCTATTGTCAATATTTGTCGTGACGGCCTTGACCTACACGATTAT
CTATACCATGGTGCCGAGGCGTCTGATTTTCAGACAGGACCCTAACTACAACAAGATTGCTAAGACAGCTGATTCTAAGG
CTAACTATGAAAATACAATCTATGAACGTATGGGTTACATTGATTACTATGACACCAAGGAGTTGCAGGAGAAAGCTAGC
TCCCTTGATAAGTCAGTAACCACTAAGCCAACAAAAGAAAATAAAGCTATTTACCAAAAATATGTGGATAGTTTAGGACA
TGGCTGGCGTTTGCATCAATTCAAGCAAAGTAAACAATTCTATGCAACACGTGATGTTCCAGTGCTTGAACGTGTATTTG
GCTTCTATACGCACCTCTTTGAATTTGACAATACTGGATGGGTTAAAGATAAAACAAATCCAAACTTGAAGCGTTACATC
CGTATTGAAAATGACCCAGCTATCGGTTGGTCAGTTGTCGGATCAGGGACTAAGCATAAATACTTGCTTTACTTTAACAG
TCAGTTCCCATTTGTTCACCAAAACTTTGTGAAGATGAACCTTGGTACATCTTACCCAACCTATGCTGAGCAGGGTGTTC
TTGATGTTATTACACAAGGACAAGGGCAAACACAAAGCTCTGAGGTCAACTTCCCTACTGGTAAGAAAGTATCTTCAGTA
GATATCTACTCTCGTACTTATAAATCACCAAGTCAGGCTGATGCTAGGGATCGTTCTTACTATGGTGACGACCCTTACAC
AGCTACTAAGAGTCGCTACCAGTACCCATCAATGGTGACAAGTTCTGCCATTGCTGGTTTGATTGGTTTGGTCTTGTCTT
ATGCTTTGGCAATTCCATTGGGATCATACATGGCACGCTTTAAAAATACACTCTTTGATAGTATTTCAACTGGTGTCTTG
ACTTTCTTGCTCTCACTACCAACCATCGCCTTGGTTTATATCATTCGTTTGATTGGTTCTGAGATTGGTCTTCCAGATTC
CTTCCCTATCTTGGGTGCGGGTGACTGGCGTTCATACGTCTTGCCATCTGTTATTCTCGGTCTTTTGTCTACACCAGGTC
TTGCCATTTGGATTCGTCGTTACATGATTGACTTGCAGTCACAAGACTTCGTTCGTTTTGCACGTGCCAAAGGGTTGTCA
GAACAAGAAATTTCGAATAAACACATTTTCAAAAATGCTATGGTTTCCTTGGTTTCAGGGATCCCAGCATCTATCGTTAG
TGTTATCACAGGGGCAACCTTGACAGAAACAATCTTTGCCTACCCTGGTATGGGTAAAATGTTGATTGACTCTGTCCGTG
CTTCAAATAACGCTATGGTTGTGGGTCTTGTATTTATTTTCACAGCCCTCACCATCTTCTCATTGCTTGTGGGTGATATC
CTTATGACTATGATTGACCCACGTATCAAATTGACATCTAAAGGAGGTAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(297-490)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

99.598

100

0.996
  amiC Streptococcus thermophilus LMG 18311

97.384

100

0.974
  amiC Streptococcus thermophilus LMD-9

96.982

100

0.97

Multiple sequence alignment