Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   AAAF57_RS02955 Genome accession   NZ_CP150847
Coordinates   577003..577932 (+) Length   309 a.a.
NCBI ID   WP_064519003.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS5     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 572003..582932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAAF57_RS02940 (AAAF57_02940) amiC 573496..574989 (+) 1494 WP_155213238.1 ABC transporter permease Regulator
  AAAF57_RS02945 (AAAF57_02945) amiD 574989..575915 (+) 927 WP_002884564.1 oligopeptide ABC transporter permease OppC Regulator
  AAAF57_RS02950 (AAAF57_02950) amiE 575925..577010 (+) 1086 WP_048673696.1 ABC transporter ATP-binding protein Regulator
  AAAF57_RS02955 (AAAF57_02955) amiF 577003..577932 (+) 930 WP_064519003.1 ATP-binding cassette domain-containing protein Regulator
  AAAF57_RS02960 (AAAF57_02960) - 577984..578769 (-) 786 WP_410536944.1 ABC transporter permease -
  AAAF57_RS02965 (AAAF57_02965) - 578781..579479 (-) 699 WP_002884466.1 ABC transporter ATP-binding protein -
  AAAF57_RS02970 (AAAF57_02970) - 579484..579861 (-) 378 WP_002884206.1 GntR family transcriptional regulator -
  AAAF57_RS02975 (AAAF57_02975) - 580043..580837 (+) 795 WP_002884689.1 HAD-IIB family hydrolase -
  AAAF57_RS02980 (AAAF57_02980) - 580830..581648 (+) 819 WP_002884514.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35031.14 Da        Isoelectric Point: 6.8435

>NTDB_id=972958 AAAF57_RS02955 WP_064519003.1 577003..577932(+) (amiF) [Streptococcus salivarius strain KSS5]
MPEKLVEVKDVEISFGEGSKKFVAVHNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGEIIFDGKKINGHLSHS
EKNDLIRRIQMIFQDPAASLNERATVDYILSEGLYNFHLYKDEEDRKAKIKKIIKEVGLLEEHLTRYPHEFSGGQRQRIG
IARSLVMQPDLVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGTIVEVAETEELYN
NPIHPYTKSLLSAVPIPDPILERKKVLKVYDPNQHDYSVDKPEMVEVRPGHFVWGNKAEIETYRKEQSK

Nucleotide


Download         Length: 930 bp        

>NTDB_id=972958 AAAF57_RS02955 WP_064519003.1 577003..577932(+) (amiF) [Streptococcus salivarius strain KSS5]
ATGCCTGAGAAGTTAGTTGAAGTAAAAGATGTGGAGATTTCCTTCGGTGAAGGAAGCAAGAAATTCGTTGCTGTCCACAA
TGCTAATTTTTTCATCAACAAGGGTGAAACCTTTTCCCTCGTTGGTGAGTCTGGTAGTGGTAAAACTACTATCGGTCGTG
CCATTATTGGTCTGAATGATACAAGTAATGGTGAGATTATTTTTGACGGTAAGAAAATCAATGGACACTTATCTCACTCT
GAGAAAAACGACCTTATCCGTCGTATTCAGATGATTTTCCAAGACCCTGCAGCTAGTTTGAATGAACGTGCAACGGTTGA
TTACATCTTGTCAGAAGGTTTGTATAACTTCCATCTCTATAAAGATGAGGAAGATCGTAAAGCCAAAATCAAGAAAATCA
TCAAAGAAGTGGGGCTTCTTGAGGAACACTTGACACGTTACCCTCACGAATTTTCTGGGGGACAACGTCAACGTATCGGG
ATTGCACGTTCCTTGGTTATGCAACCTGACTTGGTTATCGCTGATGAACCAATCTCAGCCCTTGACGTGTCAGTCCGTGC
CCAAGTTTTGAACCTGCTTAAGAAATTCCAAAAAGAGTTGGGATTGACTTACCTCTTTATCGCTCACGACTTGTCAGTGG
TCCGTTTCATTTCTGACCGTATCGCTGTTATTTACAAGGGGACAATCGTGGAAGTTGCTGAGACAGAAGAACTCTACAAC
AATCCTATCCACCCTTACACCAAGTCACTCTTGTCTGCTGTTCCTATTCCAGACCCAATCTTGGAACGTAAGAAAGTCTT
GAAGGTTTATGATCCAAACCAACACGACTATTCTGTTGATAAACCAGAGATGGTTGAAGTACGTCCAGGACACTTCGTTT
GGGGTAACAAGGCCGAGATTGAGACTTATCGTAAAGAACAAAGTAAATAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(26-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus salivarius strain HSISS4

99.676

100

0.997
  amiF Streptococcus thermophilus LMG 18311

98.382

100

0.984
  amiF Streptococcus thermophilus LMD-9

98.058

100

0.981

Multiple sequence alignment