Detailed information    

insolico Bioinformatically predicted

Overview


Name   amiE   Type   Regulator
Locus tag   AAAF57_RS02950 Genome accession   NZ_CP150847
Coordinates   575925..577010 (+) Length   361 a.a.
NCBI ID   WP_048673696.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS5     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context


Location: 570925..582010
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAAF57_RS02935 (AAAF57_02935) amiA 571465..573435 (+) 1971 WP_013990224.1 peptide ABC transporter substrate-binding protein Regulator
  AAAF57_RS02940 (AAAF57_02940) amiC 573496..574989 (+) 1494 WP_155213238.1 ABC transporter permease Regulator
  AAAF57_RS02945 (AAAF57_02945) amiD 574989..575915 (+) 927 WP_002884564.1 oligopeptide ABC transporter permease OppC Regulator
  AAAF57_RS02950 (AAAF57_02950) amiE 575925..577010 (+) 1086 WP_048673696.1 ABC transporter ATP-binding protein Regulator
  AAAF57_RS02955 (AAAF57_02955) amiF 577003..577932 (+) 930 WP_064519003.1 ATP-binding cassette domain-containing protein Regulator
  AAAF57_RS02960 (AAAF57_02960) - 577984..578769 (-) 786 WP_410536944.1 ABC transporter permease -
  AAAF57_RS02965 (AAAF57_02965) - 578781..579479 (-) 699 WP_002884466.1 ABC transporter ATP-binding protein -
  AAAF57_RS02970 (AAAF57_02970) - 579484..579861 (-) 378 WP_002884206.1 GntR family transcriptional regulator -
  AAAF57_RS02975 (AAAF57_02975) - 580043..580837 (+) 795 WP_002884689.1 HAD-IIB family hydrolase -
  AAAF57_RS02980 (AAAF57_02980) - 580830..581648 (+) 819 WP_002884514.1 Cof-type HAD-IIB family hydrolase -

Sequence


Protein


Download         Length: 361 a.a.        Molecular weight: 39919.68 Da        Isoelectric Point: 4.7069

>NTDB_id=972957 AAAF57_RS02950 WP_048673696.1 575925..577010(+) (amiE) [Streptococcus salivarius strain KSS5]
MTENKNVILSARDIVVEFDVRDRVLTAIRGVSLDLVEGEVLALVGESGSGKSVLTKTFTGMLEENGRVASGSIDYRGQDL
TKLKSHQDWAPIRGAKIATIFQDPMTSLDPIKTIGSQIVEVIVKHQGKSAKEAKKMAIDYMDKVGIPDAEKRFNEYPFQY
SGGMRQRIVIAIALACRPDVLICDEPTTALDVTIQAQIIDLLKSLKEEYGFSVIFITHDLGVVASIADKVAVMYAGEIIE
YATVEEIFYEPCHPYTWSLLSSLPQLADDKGELFSIPGTPPSLYTPVVGDAFALRSDYAMQIDFEEKAPKFQVSDTHWAK
TWLLHEDAPKVEKPAVIQNLHEKIRANMGFAHLGDEEEGNA

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=972957 AAAF57_RS02950 WP_048673696.1 575925..577010(+) (amiE) [Streptococcus salivarius strain KSS5]
ATGACAGAAAATAAAAATGTAATATTATCGGCTCGCGATATCGTCGTGGAATTTGACGTTCGTGACCGTGTTTTGACAGC
TATTCGAGGGGTTTCCCTTGATTTGGTTGAAGGTGAAGTTTTAGCCTTGGTTGGTGAGTCTGGTTCAGGTAAATCAGTTT
TGACCAAGACTTTCACAGGGATGCTTGAAGAAAATGGTCGTGTAGCCAGCGGTTCTATTGATTATCGTGGCCAAGATTTG
ACCAAGCTTAAGAGCCACCAAGATTGGGCGCCAATTCGTGGAGCTAAGATTGCGACTATCTTCCAAGATCCTATGACCAG
TCTTGACCCAATTAAGACTATCGGTAGCCAAATTGTTGAAGTCATTGTCAAACACCAAGGAAAATCAGCCAAAGAAGCTA
AAAAAATGGCCATTGACTACATGGACAAGGTTGGTATTCCTGATGCTGAAAAACGTTTCAACGAATATCCTTTCCAATAC
TCTGGTGGGATGCGTCAACGTATCGTCATTGCCATTGCCTTGGCTTGTCGTCCTGATGTCCTAATCTGTGACGAGCCAAC
AACTGCCCTTGACGTGACCATTCAAGCTCAAATCATTGACCTCTTGAAATCACTCAAAGAGGAGTATGGTTTCTCAGTGA
TTTTCATTACCCATGACCTTGGTGTGGTAGCAAGTATCGCTGACAAGGTTGCTGTTATGTATGCTGGTGAAATCATTGAG
TACGCAACTGTAGAGGAGATTTTCTATGAGCCTTGTCACCCATACACGTGGAGCTTGCTTTCAAGCTTGCCACAGTTGGC
TGACGATAAGGGTGAGCTTTTCTCAATTCCAGGGACACCACCATCACTTTATACACCTGTTGTTGGAGATGCCTTTGCCT
TGCGTTCAGACTATGCTATGCAAATTGACTTCGAGGAAAAAGCACCAAAATTCCAAGTTTCAGATACTCATTGGGCTAAG
ACCTGGCTCTTACATGAGGATGCACCAAAAGTTGAAAAACCTGCGGTTATCCAAAATCTACATGAAAAAATCCGTGCTAA
TATGGGATTTGCACATTTAGGAGATGAGGAGGAAGGCAATGCCTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

99.446

100

0.994

  amiE Streptococcus thermophilus LMG 18311

96.676

100

0.967

  amiE Streptococcus thermophilus LMD-9

96.676

100

0.967

  oppD Streptococcus mutans UA159

54.441

96.676

0.526


Multiple sequence alignment