Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   AAAF57_RS02930 Genome accession   NZ_CP150847
Coordinates   569313..571283 (+) Length   656 a.a.
NCBI ID   WP_013990223.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS5     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 564313..576283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAAF57_RS02905 (AAAF57_02905) - 565034..565609 (-) 576 WP_002886838.1 CYTH domain-containing protein -
  AAAF57_RS02910 (AAAF57_02910) - 565705..566379 (+) 675 WP_201041687.1 GTP pyrophosphokinase family protein -
  AAAF57_RS02915 (AAAF57_02915) - 566351..567187 (+) 837 WP_080611878.1 NAD kinase -
  AAAF57_RS02920 (AAAF57_02920) - 567184..568080 (+) 897 WP_049554141.1 RluA family pseudouridine synthase -
  AAAF57_RS02925 (AAAF57_02925) pta 568094..569077 (+) 984 WP_155213521.1 phosphate acetyltransferase -
  AAAF57_RS02930 (AAAF57_02930) amiA 569313..571283 (+) 1971 WP_013990223.1 peptide ABC transporter substrate-binding protein Regulator
  AAAF57_RS02935 (AAAF57_02935) amiA 571465..573435 (+) 1971 WP_013990224.1 peptide ABC transporter substrate-binding protein Regulator
  AAAF57_RS02940 (AAAF57_02940) amiC 573496..574989 (+) 1494 WP_155213238.1 ABC transporter permease Regulator
  AAAF57_RS02945 (AAAF57_02945) amiD 574989..575915 (+) 927 WP_002884564.1 oligopeptide ABC transporter permease OppC Regulator

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 71892.82 Da        Isoelectric Point: 4.9751

>NTDB_id=972953 AAAF57_RS02930 WP_013990223.1 569313..571283(+) (amiA) [Streptococcus salivarius strain KSS5]
MKKSKWLALAGVALLSVGALAACSSKSSTSGTTYGYIYNSDPETLDYITSNTGPTKTAVTNGVDGLMEADKYGNLVPSVA
EDWSVSQDGLTYTYKIRKGVKWYTSDGEEYADVTAKDFVTGLKHAADSKAGALYLVQDSIAGLSDYLSGANKDFSNVGVK
AIDDHTLQYTLKKPEPYWNSKTTYGLLFPVNEDFLKNKGKDFGKSTDPTSILYNGPFLLKSLTAKSSIELTKNENYWDKK
NVHFDAIKLSYYDGSDQEAQERSFSDGALSIARVFPMSSNYASVEKKYKDNIYYTAPGASTAAIGVNIDRQSYKFSAKKS
DAEKTSTKKALLNKDFRQSINFAIDRTAYQSQVNGKDGAALALRNLFVPSDFVSAGDKTFGDLVTEKMSTYGDEWSGVNF
ADGQDGLYNAEKAKTEFAKAKEALQGEGVQFPIHLDLPVDQSSKLNVAQAQSLKQTIEKSLGSENVVIDINQLSSDDMQN
ATLNAANAAAEDWDISNGVVWGPDYQDPSTYLDIFKTTSSENTKTFMGYDDPNNAAAAQVGLKDYDALLDSAASETTDLN
ARYDRYAQAQAWLEDSSLVIPLTVGNGAAPVISRLTPFTGASMQVGDKNSSDYFKYVKPQEKVVTKKEYEQSREKWLKEK
KASNEKAQKDLEKHVK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=972953 AAAF57_RS02930 WP_013990223.1 569313..571283(+) (amiA) [Streptococcus salivarius strain KSS5]
ATGAAAAAAAGCAAATGGTTAGCCCTTGCGGGTGTGGCACTCCTCAGTGTAGGTGCCTTAGCGGCTTGTTCATCTAAGTC
AAGCACTAGTGGAACGACTTATGGTTATATTTATAACTCAGATCCTGAAACATTGGACTATATCACGTCAAATACTGGAC
CTACTAAGACTGCTGTAACTAATGGTGTAGATGGTCTTATGGAAGCAGATAAATATGGAAATCTTGTTCCTTCAGTAGCT
GAAGATTGGTCTGTCTCTCAAGATGGTCTTACCTATACCTATAAAATCCGTAAGGGTGTTAAATGGTACACTTCAGATGG
TGAAGAGTATGCTGATGTGACTGCTAAGGACTTTGTGACTGGTCTTAAGCATGCGGCTGATTCCAAAGCTGGAGCCCTCT
ATTTGGTACAAGATTCTATTGCAGGCTTGTCTGACTACCTCTCTGGTGCCAATAAAGATTTCTCAAATGTAGGTGTCAAA
GCAATCGACGATCACACATTGCAATATACCCTTAAAAAACCAGAACCATACTGGAATTCTAAGACAACCTATGGTTTGCT
CTTCCCGGTTAACGAAGACTTTCTTAAGAATAAAGGAAAAGATTTTGGTAAGTCAACAGACCCAACCTCTATCCTTTATA
ACGGTCCTTTCCTTCTTAAATCTTTGACAGCTAAATCATCTATCGAGTTGACTAAGAATGAGAATTATTGGGATAAGAAG
AACGTGCATTTCGACGCTATCAAATTGTCATATTATGATGGTTCTGACCAGGAGGCTCAAGAGCGTAGCTTCTCAGATGG
TGCTCTCAGCATTGCACGTGTATTCCCTATGAGCTCTAACTATGCGTCAGTAGAAAAGAAATATAAAGATAATATTTATT
ACACAGCACCAGGTGCGTCTACAGCAGCTATTGGTGTGAATATTGATCGTCAAAGCTATAAATTCTCAGCTAAGAAGTCA
GATGCTGAAAAGACATCAACTAAGAAGGCTCTTCTAAACAAAGACTTCCGTCAATCAATCAACTTCGCTATTGATCGTAC
AGCTTATCAATCTCAAGTTAATGGTAAAGATGGGGCAGCTCTTGCTCTACGTAACCTCTTTGTTCCTTCTGATTTTGTCA
GTGCAGGGGATAAGACCTTTGGTGACCTTGTGACAGAGAAAATGAGCACTTACGGTGATGAATGGTCTGGTGTCAATTTT
GCGGATGGTCAAGATGGTCTCTACAATGCAGAAAAAGCTAAGACTGAGTTTGCCAAAGCCAAAGAAGCTCTTCAAGGTGA
AGGTGTTCAATTCCCAATTCACTTGGACCTTCCAGTTGATCAAAGTTCTAAACTTAATGTTGCTCAAGCTCAATCATTGA
AACAAACGATTGAAAAATCATTGGGCAGTGAAAATGTCGTTATCGATATCAACCAGTTGTCATCTGATGATATGCAAAAT
GCTACTCTTAATGCGGCTAATGCGGCAGCAGAAGACTGGGATATTTCAAACGGTGTGGTTTGGGGTCCAGACTATCAAGA
TCCATCAACTTACCTTGATATCTTTAAGACAACTTCAAGTGAAAATACCAAGACTTTCATGGGTTATGATGATCCAAACA
ATGCGGCCGCAGCCCAAGTAGGTCTTAAAGATTATGATGCCTTGCTTGATTCAGCAGCTTCAGAAACAACAGACCTCAAC
GCTCGTTACGACCGTTATGCTCAAGCTCAAGCTTGGTTGGAAGATAGCTCACTTGTCATTCCATTGACTGTTGGTAACGG
TGCAGCACCAGTTATCTCACGCTTGACACCATTTACGGGTGCTAGCATGCAAGTGGGTGATAAGAACTCATCAGACTACT
TCAAATATGTGAAACCACAAGAAAAAGTAGTTACTAAGAAAGAATATGAACAAAGTCGTGAAAAATGGCTTAAAGAAAAG
AAAGCATCTAACGAAAAAGCTCAAAAAGATCTTGAGAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

95.884

100

0.959
  amiA3 Streptococcus thermophilus LMG 18311

90.411

100

0.905
  amiA3 Streptococcus thermophilus LMD-9

90.259

100

0.904

Multiple sequence alignment