Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AABD45_RS13000 Genome accession   NZ_CP150831
Coordinates   2805175..2806698 (-) Length   507 a.a.
NCBI ID   WP_026050370.1    Uniprot ID   -
Organism   Vibrio vulnificus strain Per1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2800175..2811698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABD45_RS12980 (AABD45_13520) - 2801462..2802448 (+) 987 WP_406849043.1 serine/threonine protein kinase -
  AABD45_RS12985 (AABD45_13525) - 2802481..2803086 (+) 606 WP_046029987.1 thiol:disulfide interchange protein DsbA/DsbL -
  AABD45_RS12990 (AABD45_13530) - 2803138..2804019 (-) 882 WP_406849044.1 acyltransferase -
  AABD45_RS12995 (AABD45_13535) - 2804162..2805136 (+) 975 WP_406849045.1 DUF2860 domain-containing protein -
  AABD45_RS13000 (AABD45_13540) comM 2805175..2806698 (-) 1524 WP_026050370.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AABD45_RS13005 (AABD45_13545) ilvG 2807168..2808814 (+) 1647 WP_011079066.1 acetolactate synthase 2 catalytic subunit -
  AABD45_RS13010 (AABD45_13550) ilvM 2808826..2809110 (+) 285 WP_011079065.1 acetolactate synthase 2 small subunit -
  AABD45_RS13015 (AABD45_13555) ilvE 2809122..2810060 (+) 939 WP_011079064.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54699.85 Da        Isoelectric Point: 8.8059

>NTDB_id=972735 AABD45_RS13000 WP_026050370.1 2805175..2806698(-) (comM) [Vibrio vulnificus strain Per1]
MGLAIIHSRASVGVEAPSVSVEVHISNGLPGFTLVGLPETTVKESKDRVRSAIVNSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQISVQFLQQHEFVGELALSGELRAVKGVLPAALAAKGVSRSLVVPHANGDQAALVGKNMHKSACSL
IEVCAHLCGQQALSLHQTKQALQPSSHGRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLRDLLPEMSE
EEAMETAAVASLTQSDINEHNWKQRPFRAPHHSSSMAALVGGGTIPRPGEISLAHNGLLFLDEMPEFERKVLDSMREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARANPQAILRYLGRLSGPLLDRFDMSLEIPALPKGTLAEGGDR
GEPTAVVKERVAQARERMQLRNGKVNALLGSREIEAFCPLSKQDAEFLETALHRLGLSIRAYHRIIKVARTIADLEGAPQ
ITRAHLAEALGYRAMDRLLKQLTLQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=972735 AABD45_RS13000 WP_026050370.1 2805175..2806698(-) (comM) [Vibrio vulnificus strain Per1]
ATGGGGTTGGCGATTATTCATAGCCGTGCCAGTGTGGGCGTCGAAGCGCCTTCCGTGAGCGTGGAAGTGCACATCAGTAA
CGGCTTACCGGGATTTACCTTGGTTGGGTTGCCGGAAACCACCGTAAAGGAATCAAAAGATCGCGTACGCAGTGCGATCG
TCAACAGCAATTTTCAATTTCCTGCTAAGCGGATCACCGTCAACTTGGCGCCCGCCGATCTGCCCAAAGAAGGGGGACGC
TTTGACTTGCCGATCGCACTCGGTATTTTAGCCGCTTCTGAGCAGATCTCCGTTCAGTTTCTCCAGCAACATGAATTTGT
CGGTGAGTTAGCCTTAAGTGGTGAGCTACGAGCGGTGAAAGGGGTTTTGCCAGCCGCTCTTGCCGCCAAAGGGGTCTCCC
GCAGTTTGGTGGTACCTCATGCGAATGGGGATCAAGCCGCCTTGGTGGGCAAGAACATGCATAAGTCGGCGTGCTCGCTG
ATTGAAGTTTGTGCCCATTTATGTGGCCAGCAAGCCCTGTCATTACATCAAACCAAGCAAGCATTGCAGCCCTCATCACA
TGGTCGAGATTTACAAGACATCATTGGTCAACAACAAGGAAAGCGAGCGCTAGAAATTGCAGCGGCAGGTAATCACAATT
TGTTGTTTTTAGGGCCTCCTGGGACCGGAAAAACCATGCTGGCGTCACGTTTGCGAGATTTGTTACCTGAAATGAGTGAG
GAAGAGGCGATGGAAACGGCAGCGGTGGCTTCTTTAACACAAAGCGATATCAACGAGCACAATTGGAAGCAGCGGCCATT
TCGCGCACCGCATCACTCGAGTTCTATGGCGGCGCTGGTGGGCGGTGGAACCATTCCGCGTCCCGGAGAAATCTCACTTG
CCCACAACGGCTTACTGTTTTTGGATGAGATGCCGGAATTTGAGCGCAAAGTGCTCGATTCAATGCGTGAACCGCTAGAG
TCTGGGGAAATCATCATTTCACGAGCACAAGGTAAAACTCGTTTTCCTGCTCGCTTTCAGTTGGTCGGTGCGTTGAATCC
GAGCCCTACGGGCTATTACGAAGGGAACCAAGCTCGCGCCAATCCTCAGGCGATTTTGCGTTATTTAGGCCGTTTATCGG
GCCCACTTTTGGATCGTTTTGATATGTCACTCGAGATCCCTGCATTACCCAAAGGCACATTGGCGGAAGGGGGTGACCGA
GGTGAACCAACGGCGGTGGTGAAGGAGCGAGTGGCGCAGGCGAGAGAGCGTATGCAGCTTCGTAATGGCAAGGTGAATGC
TCTGTTAGGCAGCCGAGAAATCGAAGCGTTTTGCCCATTGAGTAAGCAAGATGCCGAGTTTCTTGAAACGGCGTTGCACC
GTTTGGGGTTATCGATTCGCGCTTATCACCGCATCATCAAAGTGGCGCGAACCATTGCCGATTTAGAAGGCGCACCTCAG
ATAACGCGTGCACACTTAGCCGAAGCACTCGGTTATCGGGCGATGGATCGCTTGCTCAAACAGTTAACTCTGCAAGCGGT
TTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

88.363

100

0.884
  comM Vibrio cholerae strain A1552

84.221

100

0.842
  comM Haemophilus influenzae Rd KW20

65.286

100

0.653
  comM Glaesserella parasuis strain SC1401

62.648

99.803

0.625
  comM Legionella pneumophila str. Paris

50.403

97.83

0.493
  comM Legionella pneumophila strain ERS1305867

50.403

97.83

0.493
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.11

100

0.432

Multiple sequence alignment