Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   WMO13_RS08280 Genome accession   NZ_CP150637
Coordinates   2003651..2005156 (-) Length   501 a.a.
NCBI ID   WP_270049082.1    Uniprot ID   -
Organism   Ignatzschineria larvae DSM 13226     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1998651..2010156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WMO13_RS08260 (WMO13_08260) - 2000164..2000478 (+) 315 WP_026878138.1 hypothetical protein -
  WMO13_RS08265 (WMO13_08265) - 2000767..2001477 (-) 711 WP_051396028.1 TIGR00730 family Rossman fold protein -
  WMO13_RS08270 (WMO13_08270) - 2001567..2002436 (-) 870 WP_051396029.1 class I SAM-dependent methyltransferase -
  WMO13_RS08275 (WMO13_08275) - 2002827..2003429 (-) 603 WP_169727756.1 DNA-3-methyladenine glycosylase I -
  WMO13_RS08280 (WMO13_08280) comM 2003651..2005156 (-) 1506 WP_270049082.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  WMO13_RS08285 (WMO13_08285) - 2005402..2006181 (+) 780 WP_026878141.1 enoyl-ACP reductase -
  WMO13_RS08290 (WMO13_08290) - 2006988..2008196 (+) 1209 WP_051396030.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 55540.42 Da        Isoelectric Point: 6.3958

>NTDB_id=970844 WMO13_RS08280 WP_270049082.1 2003651..2005156(-) (comM) [Ignatzschineria larvae DSM 13226]
MVSVIHTRALDALSAPEVRVEVHISNGLPAFTIVGMPETAVKESKDRVIAAIVNSGFEFPNRKITINLSPADLPKEGGRY
DLPIALAVLEASGQIASDVSRYEFVGELALTGELRPINGLLPTAIQVMQEEGILIVPKERSEEIGFLQYDRFLVASDLRS
VVDFIEGRIDLSRPPEITVESSIQNRCFSEVKGQFFAKRALEIAAAGGHNLLLIGPPGTGKTMLASRFITIMPSMTREEA
IESAMIASVSRQGFRAEQFGVRPYRTPHHTASSVALVGGGTYPKPGEISLAHHGVLFLDELPEFNRHVLEVLREPMESGS
IHLSRAMQQVTFPAKFQLLSAMNPCPCGYYGDPVHDCTCSDYAIARYRGRVSGPMLDRIDLHVEVPRISTEELQSSEQGE
TSEMIRARVERARQQQLTRRGKMNADLAVRDIEQDCHLGETEQKLLEMAQKRLNFSPRSYHRILRVARTIADLEGETNIN
SRHLTESLAFRALDRGYQASN

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=970844 WMO13_RS08280 WP_270049082.1 2003651..2005156(-) (comM) [Ignatzschineria larvae DSM 13226]
ATGGTTTCAGTAATTCATACTCGGGCATTAGATGCTCTGTCAGCACCGGAAGTGCGGGTTGAGGTACATATTAGTAATGG
CTTGCCGGCATTTACGATTGTAGGAATGCCTGAGACGGCGGTGAAAGAGAGTAAGGATCGTGTGATTGCGGCGATTGTGA
ATTCAGGGTTTGAATTTCCGAATCGAAAAATTACCATTAATCTTTCCCCTGCTGATTTGCCTAAAGAGGGTGGGCGCTAT
GATTTACCCATTGCATTAGCGGTATTAGAAGCATCAGGGCAGATTGCTTCTGACGTCAGTCGTTATGAGTTTGTCGGAGA
GCTTGCTTTAACAGGGGAACTGCGTCCTATTAATGGGTTACTCCCCACCGCCATTCAGGTCATGCAAGAAGAGGGAATTT
TGATTGTGCCTAAAGAGCGATCAGAAGAGATTGGCTTTCTGCAATATGATCGTTTTTTAGTGGCATCTGATCTAAGATCT
GTGGTGGATTTTATAGAGGGGAGAATTGATCTTTCACGCCCCCCGGAAATAACTGTAGAATCTTCGATTCAAAATCGTTG
TTTTTCAGAAGTAAAAGGACAGTTTTTCGCAAAAAGAGCGCTAGAGATCGCAGCGGCAGGTGGGCATAATCTTCTTTTAA
TTGGGCCTCCGGGGACGGGGAAGACGATGCTTGCTTCGCGATTTATTACAATTATGCCGAGTATGACGCGGGAAGAAGCG
ATTGAGAGTGCGATGATTGCTTCTGTGAGTCGGCAAGGATTTCGAGCAGAACAATTTGGCGTTCGCCCCTATCGAACGCC
TCACCATACGGCTTCTTCTGTGGCACTAGTGGGTGGGGGAACTTACCCTAAGCCTGGGGAGATTTCACTGGCGCATCATG
GTGTTCTCTTTCTTGATGAACTTCCGGAATTTAACCGGCATGTATTAGAGGTTTTACGGGAGCCTATGGAATCGGGTTCT
ATTCATCTTTCTAGAGCGATGCAGCAGGTCACTTTTCCTGCTAAATTTCAACTGTTATCGGCCATGAATCCCTGTCCTTG
TGGTTATTATGGTGATCCTGTACATGATTGTACCTGCAGTGATTATGCCATTGCCCGTTATCGTGGGCGTGTATCGGGAC
CTATGTTAGATAGAATTGATTTGCATGTGGAGGTGCCGAGAATTAGTACCGAGGAGCTACAAAGTAGTGAACAAGGGGAA
ACATCAGAGATGATTCGCGCTAGAGTAGAAAGGGCAAGGCAACAACAACTAACAAGACGAGGGAAGATGAATGCAGATCT
TGCGGTGCGAGATATTGAGCAAGATTGTCATTTAGGAGAAACTGAACAGAAATTACTCGAAATGGCACAAAAACGGCTCA
ATTTTTCCCCAAGAAGTTATCATCGCATCTTGCGCGTTGCAAGGACGATAGCGGATCTTGAGGGGGAAACGAATATTAAT
AGTCGGCATTTAACAGAGAGTTTAGCTTTTCGAGCACTTGATCGTGGCTATCAAGCGAGTAATTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(399-491)

Subunit ChlI of Mg-chelatase (ChlI)

(20-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.71

99.202

0.513
  comM Glaesserella parasuis strain SC1401

50.198

100

0.505
  comM Vibrio campbellii strain DS40M4

50.602

99.401

0.503
  comM Haemophilus influenzae Rd KW20

49.405

100

0.497
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.184

100

0.471
  comM Legionella pneumophila str. Paris

47.853

97.605

0.467
  comM Legionella pneumophila strain ERS1305867

47.853

97.605

0.467

Multiple sequence alignment