Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   WJM45_RS01655 Genome accession   NZ_CP150634
Coordinates   366545..368056 (-) Length   503 a.a.
NCBI ID   WP_341327267.1    Uniprot ID   -
Organism   Methylotuvimicrobium sp. KM2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 361545..373056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WJM45_RS01630 (WJM45_01630) - 362717..363022 (-) 306 WP_341327263.1 type II toxin-antitoxin system VapC family toxin -
  WJM45_RS01635 (WJM45_01635) - 363019..363243 (-) 225 WP_341327264.1 hypothetical protein -
  WJM45_RS01640 (WJM45_01640) - 363518..364084 (-) 567 WP_341327265.1 hypothetical protein -
  WJM45_RS01645 (WJM45_01645) - 364545..365225 (-) 681 WP_341328901.1 zinc-ribbon domain-containing protein -
  WJM45_RS01650 (WJM45_01650) - 365694..366062 (+) 369 WP_341327266.1 hypothetical protein -
  WJM45_RS01655 (WJM45_01655) comM 366545..368056 (-) 1512 WP_341327267.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  WJM45_RS01660 (WJM45_01660) - 368294..368566 (-) 273 WP_341327268.1 accessory factor UbiK family protein -
  WJM45_RS01665 (WJM45_01665) - 369129..369704 (-) 576 WP_341327269.1 helix-turn-helix domain-containing protein -
  WJM45_RS01670 (WJM45_01670) - 370133..370558 (+) 426 WP_341327270.1 RNA-binding protein -

Sequence

Protein


Download         Length: 503 a.a.        Molecular weight: 54248.22 Da        Isoelectric Point: 7.5734

>NTDB_id=970737 WJM45_RS01655 WP_341327267.1 366545..368056(-) (comM) [Methylotuvimicrobium sp. KM2]
MTLAVAYSRGRSGIDAPLVTVEVHVTSGLPALNIVGLPETAVKESRDRVRGAIINSYFEFPMQRVTINLAPADLPKEGGR
FDLAIALGILAASGQIPAARLAEVECVGELSLGGELRPVSGVLPIAIQTRNSQKQLILPKDNCAEAALVKDIGLLPANHL
LEVCAHLNGQKSIVIENEAHVLTAETESVDFSDVHGQFHVKRAFEIAASGAHNLIMLGPPGTGKSMLAARLPTILPPLTE
QQAQETAAIASISDKGLDVANWLKPPFRAPHHTASAAALVGGGGNPKPGEISLAHNGTLFLDELPEFDRRVLEVLREPLE
TGHISISRAARQAEFPARFQLVAAMNPCPCGYLGDPSGRCHCSVEQVARYRARISGPLLDRIDMHLEVPRVSREVLRKGS
KEGEESSVQIRARVVTARNIAMSRQGKTNAALSAREVKQHCRLSDQGHELLEQAMDKFGLSHRAYHRILKVARTIADLAG
SETIEISHLSEAIGYRRLDRKAD

Nucleotide


Download         Length: 1512 bp        

>NTDB_id=970737 WJM45_RS01655 WP_341327267.1 366545..368056(-) (comM) [Methylotuvimicrobium sp. KM2]
ATGACATTAGCCGTAGCCTATAGCCGCGGCCGTTCCGGAATCGATGCGCCCTTGGTGACTGTGGAAGTCCATGTTACGAG
CGGACTACCCGCGCTCAATATCGTCGGTTTACCCGAAACGGCGGTCAAGGAAAGCCGAGACCGTGTGCGCGGTGCGATAA
TCAATTCATATTTCGAATTTCCGATGCAGCGCGTCACGATCAATCTAGCTCCGGCCGATTTACCGAAGGAAGGCGGGCGT
TTCGATCTGGCAATCGCATTAGGTATTCTTGCGGCATCAGGGCAAATTCCGGCAGCCCGCCTAGCCGAAGTCGAATGTGT
CGGCGAACTGTCGCTTGGCGGCGAATTGCGTCCGGTCAGCGGAGTTTTACCGATAGCGATACAAACACGGAATAGCCAAA
AACAATTAATTCTGCCTAAAGATAATTGCGCCGAAGCAGCCTTGGTTAAAGATATTGGCCTATTGCCGGCCAATCATTTA
CTTGAAGTATGCGCCCACCTAAACGGACAGAAATCGATCGTCATCGAAAATGAAGCCCATGTGTTAACGGCGGAAACGGA
ATCGGTCGATTTTTCCGATGTGCATGGGCAATTTCATGTCAAGCGCGCATTCGAAATCGCCGCATCCGGCGCGCATAATT
TAATCATGCTCGGACCGCCCGGTACCGGTAAATCGATGCTGGCCGCGCGCTTGCCGACGATTCTACCGCCGCTGACCGAA
CAGCAGGCTCAGGAAACCGCCGCGATTGCATCGATTAGCGACAAAGGGCTCGATGTTGCTAATTGGTTGAAGCCGCCGTT
TCGTGCGCCGCATCATACCGCATCGGCTGCGGCGTTGGTCGGTGGCGGCGGTAATCCGAAACCGGGGGAAATATCTCTAG
CTCATAACGGCACTTTGTTTTTGGACGAATTGCCCGAATTCGACCGTAGGGTGCTGGAAGTATTACGTGAACCGCTCGAA
ACCGGTCATATCAGTATTTCGCGTGCTGCCCGGCAAGCAGAATTTCCGGCGCGATTTCAATTGGTCGCTGCGATGAATCC
ATGCCCATGCGGTTATCTCGGTGATCCGTCCGGACGTTGTCATTGTTCGGTAGAACAAGTCGCACGATACCGCGCCCGTA
TTTCAGGGCCGTTGCTCGATCGCATCGATATGCATTTGGAGGTGCCGAGAGTGTCTCGAGAGGTGCTGCGAAAAGGCTCG
AAGGAAGGTGAAGAAAGCAGTGTGCAAATTAGAGCACGGGTTGTCACGGCGCGAAATATCGCGATGTCGCGTCAAGGAAA
AACCAATGCGGCGCTCAGCGCACGCGAAGTCAAACAGCATTGCCGGTTATCCGATCAAGGCCATGAGCTGCTCGAACAAG
CCATGGATAAGTTCGGATTATCGCACCGCGCCTATCACCGTATTCTCAAAGTCGCAAGAACCATAGCCGATTTGGCCGGT
TCCGAAACGATAGAAATTTCTCATTTGAGCGAGGCGATCGGCTACCGCAGATTGGATAGGAAAGCCGACTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-496)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.4

99.404

0.541
  comM Vibrio campbellii strain DS40M4

53.8

99.404

0.535
  comM Haemophilus influenzae Rd KW20

52.778

100

0.529
  comM Glaesserella parasuis strain SC1401

52.485

100

0.525
  comM Legionella pneumophila str. Paris

51.509

98.807

0.509
  comM Legionella pneumophila strain ERS1305867

51.509

98.807

0.509
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.638

100

0.481

Multiple sequence alignment