Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   V1467_RS19360 Genome accession   NZ_CP150481
Coordinates   4284276..4285787 (-) Length   503 a.a.
NCBI ID   WP_416306625.1    Uniprot ID   -
Organism   Neptunicella sp. SCSIO 80796     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4279276..4290787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1467_RS19340 - 4279498..4280226 (+) 729 WP_416306621.1 response regulator transcription factor -
  V1467_RS19345 - 4280223..4281581 (+) 1359 WP_416306622.1 ATP-binding protein -
  V1467_RS19350 ilvC 4281779..4283263 (-) 1485 WP_416306623.1 ketol-acid reductoisomerase -
  V1467_RS19355 ilvY 4283403..4284260 (+) 858 WP_416306624.1 HTH-type transcriptional activator IlvY -
  V1467_RS19360 comM 4284276..4285787 (-) 1512 WP_416306625.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  V1467_RS19365 - 4286217..4288523 (+) 2307 WP_416306626.1 efflux RND transporter permease subunit -
  V1467_RS19370 - 4288513..4289328 (+) 816 WP_416306627.1 outer membrane lipoprotein-sorting protein -

Sequence

Protein


Download         Length: 503 a.a.        Molecular weight: 54748.59 Da        Isoelectric Point: 7.2611

>NTDB_id=970542 V1467_RS19360 WP_416306625.1 4284276..4285787(-) (comM) [Neptunicella sp. SCSIO 80796]
MSLARVHSRACVGVDAPLITIEVHLANGLPAFNIVGLPEASVREARDRVRSALINSQFEFPAKRITVNLAPADLPKEGGR
FDLAIAIGIIAANGQIPVDNLNQYELLGELGLSGEIRAVSGVLPFAFACHRDEHSAIVPVSNVQEAALIKHAKVLGAAQL
LDVFHHLNGQQPLPFEPAQRAALEAKYFIDMQDVVGQSAAKRALEIAAAGQHNMLMTGPPGTGKTMLANRLISILPEMTD
DEALQTAAIHSVSGKVVDPQSWRARPFRSPHHTSSAVALVGGGSIPRPGEISLAHNGVLFLDELPEFDRKVLDVLREPME
SGTVSISRAARQAQFPASFQLIAAMNPSPTGAMDDGRSTSDQILRYLNRVSGPFLDRIDLQIDVPKLPGGSFSEQIKERG
ESSEQIRQRVIQARNVQLRRAGKANAHLNNKELERYCPLLAEDQKFLESAVEKLGLSIRSYHRIVKVARTIADLDHQDNI
QHAHIAQALSYRSFDRLLGQLGM

Nucleotide


Download         Length: 1512 bp        

>NTDB_id=970542 V1467_RS19360 WP_416306625.1 4284276..4285787(-) (comM) [Neptunicella sp. SCSIO 80796]
ATGTCGTTAGCCAGAGTCCATAGCAGAGCCTGTGTCGGTGTAGACGCTCCGCTGATTACTATTGAAGTTCATCTCGCCAA
CGGCTTACCCGCATTTAACATTGTTGGCCTTCCCGAGGCTTCGGTTCGCGAGGCACGTGACCGGGTCAGAAGCGCCTTAA
TCAACTCACAGTTTGAATTCCCGGCTAAAAGGATCACGGTTAATTTGGCACCCGCCGATTTACCCAAGGAAGGTGGGCGT
TTCGACTTGGCCATTGCCATAGGCATCATTGCGGCGAACGGCCAAATTCCAGTTGATAACCTGAATCAGTATGAATTGCT
GGGTGAGTTGGGACTCAGTGGTGAAATTCGTGCTGTCAGTGGTGTATTACCTTTTGCGTTTGCCTGTCATCGTGATGAAC
ATAGCGCCATCGTACCGGTTAGCAATGTACAGGAAGCCGCTTTGATAAAACACGCTAAAGTGCTTGGAGCCGCGCAGTTG
CTGGATGTATTTCATCATCTTAATGGCCAACAGCCTTTGCCGTTTGAACCAGCTCAACGCGCTGCATTAGAGGCGAAATA
TTTTATCGACATGCAGGATGTGGTAGGACAAAGCGCAGCGAAACGCGCATTAGAGATCGCGGCAGCCGGGCAGCATAATA
TGTTGATGACCGGGCCTCCAGGAACGGGCAAGACCATGTTAGCCAATCGTTTAATCAGTATTTTACCGGAAATGACTGAC
GACGAAGCATTGCAAACGGCAGCCATTCATTCGGTTTCGGGTAAAGTGGTCGATCCGCAAAGCTGGCGGGCGCGTCCGTT
TCGCAGTCCGCACCATACCAGTTCGGCCGTGGCATTGGTCGGCGGTGGCAGTATTCCCAGGCCCGGTGAAATATCGTTGG
CGCACAACGGGGTATTGTTTCTGGACGAATTGCCGGAATTTGATCGCAAAGTGCTGGATGTATTACGCGAACCGATGGAA
TCCGGCACAGTATCCATTTCCCGGGCTGCCCGTCAGGCGCAGTTTCCCGCCAGTTTCCAACTGATTGCGGCAATGAATCC
TAGTCCAACCGGGGCAATGGACGACGGTCGTAGTACCAGCGACCAGATCCTGCGCTATCTGAACCGGGTGTCCGGTCCGT
TTCTGGATCGGATTGATTTACAGATTGATGTACCCAAGCTTCCCGGTGGCAGTTTCTCCGAGCAAATTAAGGAGCGCGGT
GAATCCAGTGAGCAGATCCGCCAGCGTGTCATCCAGGCTCGTAATGTACAGCTCCGACGCGCGGGTAAAGCTAATGCGCA
TTTAAACAACAAGGAGCTGGAACGTTATTGTCCATTATTGGCCGAAGATCAAAAATTTCTGGAAAGTGCGGTGGAGAAGC
TCGGACTATCAATTCGCAGTTATCACCGTATTGTCAAAGTGGCGCGTACTATTGCCGATCTTGATCATCAGGATAATATT
CAGCATGCGCATATTGCCCAGGCGTTAAGTTATCGCAGTTTTGATCGTCTGCTTGGCCAGTTAGGCATGTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-388)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

58.648

100

0.586
  comM Glaesserella parasuis strain SC1401

57.988

100

0.584
  comM Haemophilus influenzae Rd KW20

57.988

100

0.584
  comM Vibrio campbellii strain DS40M4

56.548

100

0.567
  comM Legionella pneumophila str. Paris

50.301

99.205

0.499
  comM Legionella pneumophila strain ERS1305867

50.301

99.205

0.499
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

48.521

100

0.489

Multiple sequence alignment