Detailed information NTG0970515

Bioinformatically predicted

Overview

• Name: comFC
• Type: Machinery gene
• Locus tag: SOZ35_RS18540
• Genome accession: NZ_CP150480
• Coordinates: 3653042..3653731 (-)
• Length: 229 a.a.
• NCBI ID: WP_340640751.1
• Uniprot ID: -
• Organism: Bacillus atrophaeus strain TL401
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3648042..3658731

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SOZ35_RS18505 (SOZ35_18505)	fliW	3648185..3648616 (-)	432	WP_061570800.1	flagellar assembly protein FliW	-
SOZ35_RS18510 (SOZ35_18510)	-	3648651..3649217 (-)	567	WP_340639878.1	DUF6470 family protein	-
SOZ35_RS18515 (SOZ35_18515)	flgL	3649265..3650161 (-)	897	WP_088118067.1	flagellar hook-associated protein FlgL	-
SOZ35_RS18520 (SOZ35_18520)	flgK	3650173..3651696 (-)	1524	WP_268476347.1	flagellar hook-associated protein FlgK	-
SOZ35_RS18525 (SOZ35_18525)	-	3651713..3652195 (-)	483	WP_340639879.1	flagellar protein FlgN	-
SOZ35_RS18530 (SOZ35_18530)	flgM	3652211..3652471 (-)	261	WP_340639880.1	flagellar biosynthesis anti-sigma factor FlgM	-
SOZ35_RS18535 (SOZ35_18535)	-	3652551..3652970 (-)	420	WP_003326721.1	TIGR03826 family flagellar region protein	-
SOZ35_RS18540 (SOZ35_18540)	comFC	3653042..3653731 (-)	690	WP_340640751.1	double zinc ribbon domain-containing protein	Machinery gene
SOZ35_RS18545 (SOZ35_18545)	-	3653728..3654024 (-)	297	WP_106033805.1	late competence development ComFB family protein	-
SOZ35_RS18550 (SOZ35_18550)	comFA	3654081..3655478 (-)	1398	WP_212063894.1	ATP-dependent helicase ComFA	Machinery gene
SOZ35_RS18555 (SOZ35_18555)	-	3655585..3656427 (-)	843	WP_003326716.1	DegV family protein	-
SOZ35_RS18560 (SOZ35_18560)	degU	3656534..3657223 (-)	690	WP_003219701.1	two-component system response regulator DegU	Regulator
SOZ35_RS18565 (SOZ35_18565)	degS	3657300..3658463 (-)	1164	WP_003326714.1	two-component sensor histidine kinase DegS	Regulator

Sequence

Protein

• Length: 229 a.a.
• Molecular weight: 26206.11 Da
• Isoelectric Point: 7.9860

>NTDB_id=970515 SOZ35_RS18540 WP_340640751.1 3653042..3653731(-) (comFC) [Bacillus atrophaeus strain TL401]
MNCLLCDSQFSQSLTWRSLFLLEPDEKVCHPCKRQLQRIAGTVCPSCGRPQNTNEKCPDCTEWESRIDRGFLLSRNRSVY
LYNEMMKESLARFKFRGDAELLHVFKTDFVSEFSTAYPEKSYVLIPIPLSEERKAERGFNQSELLAKCLGPPIIHSLTRL
DNEKQSKKNKAERLLFKRVFDTEINSVGDMDVILIDDLYTTGATLHHAARCLLEKGKAGSVSSFTLIRS

Nucleotide

• Length: 690 bp

>NTDB_id=970515 SOZ35_RS18540 WP_340640751.1 3653042..3653731(-) (comFC) [Bacillus atrophaeus strain TL401]
CTGAACTGCTTATTGTGTGATTCGCAGTTTTCTCAATCTCTTACGTGGAGATCTTTATTTTTATTAGAGCCGGACGAAAA
GGTCTGTCATCCGTGTAAAAGACAATTACAAAGAATCGCAGGAACGGTTTGCCCTTCATGCGGCAGACCTCAAAACACAA
ATGAAAAATGCCCCGATTGCACCGAATGGGAATCAAGGATTGATAGAGGCTTCCTTTTAAGCCGAAACCGTTCTGTTTAT
TTATATAATGAGATGATGAAAGAATCGCTGGCCCGTTTTAAATTCAGAGGAGACGCAGAGCTTTTGCATGTTTTTAAGAC
TGATTTTGTATCGGAATTTTCAACTGCCTATCCTGAAAAAAGCTATGTGCTCATTCCAATCCCGCTGAGTGAGGAACGGA
AAGCAGAGCGCGGGTTTAACCAGTCAGAGCTTCTGGCGAAATGTTTAGGCCCGCCCATCATTCATTCCCTAACCCGTTTG
GATAATGAAAAACAATCCAAGAAAAACAAAGCGGAACGGCTCCTTTTCAAACGTGTTTTTGATACTGAAATCAATTCCGT
TGGAGATATGGATGTCATATTAATCGATGATCTTTATACCACTGGCGCTACCTTACACCATGCAGCCCGCTGTTTATTGG
AAAAAGGAAAAGCAGGCTCTGTGTCCTCTTTTACTTTAATCAGAAGCTAA

Domains

Predicted by InterproScan.

• Double zinc ribbon domain (DZR_2) (2-60)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFC	Bacillus subtilis subsp. subtilis str. 168	66.52	99.127	0.659
comFC/cflB	Streptococcus pneumoniae TIGR4	37.118	100	0.371
comFC/cflB	Streptococcus pneumoniae Rx1	37.118	100	0.371
comFC/cflB	Streptococcus pneumoniae D39	37.118	100	0.371
comFC/cflB	Streptococcus pneumoniae R6	37.118	100	0.371