Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   SOZ35_RS18550 Genome accession   NZ_CP150480
Coordinates   3654081..3655478 (-) Length   465 a.a.
NCBI ID   WP_212063894.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain TL401     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3649081..3660478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOZ35_RS18515 (SOZ35_18515) flgL 3649265..3650161 (-) 897 WP_088118067.1 flagellar hook-associated protein FlgL -
  SOZ35_RS18520 (SOZ35_18520) flgK 3650173..3651696 (-) 1524 WP_268476347.1 flagellar hook-associated protein FlgK -
  SOZ35_RS18525 (SOZ35_18525) - 3651713..3652195 (-) 483 WP_340639879.1 flagellar protein FlgN -
  SOZ35_RS18530 (SOZ35_18530) flgM 3652211..3652471 (-) 261 WP_340639880.1 flagellar biosynthesis anti-sigma factor FlgM -
  SOZ35_RS18535 (SOZ35_18535) - 3652551..3652970 (-) 420 WP_003326721.1 TIGR03826 family flagellar region protein -
  SOZ35_RS18540 (SOZ35_18540) comFC 3653042..3653731 (-) 690 WP_340640751.1 double zinc ribbon domain-containing protein Machinery gene
  SOZ35_RS18545 (SOZ35_18545) - 3653728..3654024 (-) 297 WP_106033805.1 late competence development ComFB family protein -
  SOZ35_RS18550 (SOZ35_18550) comFA 3654081..3655478 (-) 1398 WP_212063894.1 ATP-dependent helicase ComFA Machinery gene
  SOZ35_RS18555 (SOZ35_18555) - 3655585..3656427 (-) 843 WP_003326716.1 DegV family protein -
  SOZ35_RS18560 (SOZ35_18560) degU 3656534..3657223 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  SOZ35_RS18565 (SOZ35_18565) degS 3657300..3658463 (-) 1164 WP_003326714.1 two-component sensor histidine kinase DegS Regulator
  SOZ35_RS18570 (SOZ35_18570) - 3658681..3659334 (+) 654 WP_003326713.1 YigZ family protein -

Sequence

Protein


Download         Length: 465 a.a.        Molecular weight: 53036.62 Da        Isoelectric Point: 10.1151

>NTDB_id=970516 SOZ35_RS18550 WP_212063894.1 3654081..3655478(-) (comFA) [Bacillus atrophaeus strain TL401]
MQTDLKKKPLFSADLQQFLHQRHLLRTEIPFSEEIINWHIEHGFISAEKSIIKNKKGYLCNRCGQNDKRYFSSYWSCSDE
KNQMYCRSCVMMGRVSENIFLYSWIKEVEASWQPIKLTWEGKLSLGQQKAADILIDAITKREELLIWAVCGAGKTEILFP
GIEFALNQGFRVCIATPRTDVVLELTPRLKTAFQTTKISALYGGSEDKGSLSPLMISTTHQLLRYKEAFDVIVIDEVDAF
PYSADQTLQFAVQKARKKNSTLIYLSATPSKELKKKAHIGKLNSVRIPARHHRKPLPEPRFCWCGNWQKKLAGSKIPKQV
KIWVEQHVKVGRPVFLFVPSVSVLEKVTACFAGMRYRTAGVHAEDKNRKEKVQQFRDGRLDVLITTTILERGVTVPMVQT
GVLGAESPIFTESALVQIAGRTGRHKKHAQGDVIYFHFGKTKSMIDARNHINEMNKLARKNELID

Nucleotide


Download         Length: 1398 bp        

>NTDB_id=970516 SOZ35_RS18550 WP_212063894.1 3654081..3655478(-) (comFA) [Bacillus atrophaeus strain TL401]
ATGCAGACTGATTTGAAAAAGAAACCTTTGTTCTCTGCTGATCTGCAGCAGTTCCTTCATCAGCGCCACTTGCTTAGAAC
TGAAATCCCATTCTCTGAGGAAATTATCAACTGGCATATTGAGCATGGTTTTATTTCCGCTGAAAAATCAATCATCAAAA
ATAAAAAGGGTTATTTGTGTAACAGGTGCGGCCAAAATGATAAGCGGTATTTTTCCTCCTACTGGTCATGCTCAGATGAA
AAAAATCAAATGTATTGCCGTTCGTGTGTCATGATGGGAAGAGTAAGCGAGAACATTTTCTTATATTCATGGATAAAGGA
GGTGGAAGCAAGCTGGCAGCCTATAAAGCTTACTTGGGAAGGTAAACTCTCTCTTGGACAGCAAAAAGCGGCGGATATTT
TAATTGACGCGATAACTAAAAGGGAAGAGCTTCTTATTTGGGCTGTTTGCGGCGCAGGTAAAACCGAAATATTATTCCCG
GGCATTGAGTTTGCGTTAAATCAGGGATTTCGTGTATGTATTGCAACACCGCGCACCGATGTCGTACTAGAGCTTACTCC
AAGGCTGAAAACCGCCTTTCAGACCACAAAGATCTCAGCCCTTTACGGAGGGAGTGAAGATAAAGGGAGCTTGTCCCCGC
TGATGATTTCAACGACACATCAGCTATTACGTTACAAAGAAGCATTTGACGTCATCGTCATAGACGAAGTTGATGCTTTT
CCTTATTCTGCTGATCAAACTCTCCAGTTTGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCATTTATTTAAGTGC
AACACCTTCCAAAGAATTAAAAAAGAAAGCGCATATAGGGAAGTTAAACTCGGTTCGCATACCCGCAAGACATCACCGGA
AACCATTGCCTGAACCACGTTTTTGCTGGTGCGGAAACTGGCAAAAAAAATTAGCCGGAAGCAAAATTCCGAAACAGGTG
AAAATATGGGTAGAACAGCATGTGAAAGTAGGCAGACCTGTTTTTTTATTTGTGCCGTCTGTTTCCGTTTTAGAGAAGGT
TACTGCCTGTTTCGCCGGCATGAGATATCGGACAGCGGGTGTGCATGCGGAAGATAAGAACCGTAAAGAGAAAGTGCAGC
AATTCAGGGACGGCCGGCTTGATGTATTAATCACAACGACCATATTAGAAAGAGGAGTTACTGTTCCAATGGTGCAGACT
GGCGTATTGGGAGCTGAATCGCCTATATTTACTGAGAGCGCACTCGTCCAAATCGCCGGGAGGACAGGGCGGCATAAAAA
ACATGCTCAGGGTGACGTCATATATTTTCACTTTGGAAAAACAAAGAGTATGATAGATGCCAGAAATCATATAAACGAAA
TGAATAAATTGGCAAGAAAAAACGAATTAATAGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(326-425)

Type III restriction enzyme, res subunit (ResIII)

(123-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

76.129

100

0.761

Multiple sequence alignment