Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   SOZ35_RS18560 Genome accession   NZ_CP150480
Coordinates   3656534..3657223 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus atrophaeus strain TL401     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3651534..3662223
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOZ35_RS18525 (SOZ35_18525) - 3651713..3652195 (-) 483 WP_340639879.1 flagellar protein FlgN -
  SOZ35_RS18530 (SOZ35_18530) flgM 3652211..3652471 (-) 261 WP_340639880.1 flagellar biosynthesis anti-sigma factor FlgM -
  SOZ35_RS18535 (SOZ35_18535) - 3652551..3652970 (-) 420 WP_003326721.1 TIGR03826 family flagellar region protein -
  SOZ35_RS18540 (SOZ35_18540) comFC 3653042..3653731 (-) 690 WP_340640751.1 double zinc ribbon domain-containing protein Machinery gene
  SOZ35_RS18545 (SOZ35_18545) - 3653728..3654024 (-) 297 WP_106033805.1 late competence development ComFB family protein -
  SOZ35_RS18550 (SOZ35_18550) comFA 3654081..3655478 (-) 1398 WP_212063894.1 ATP-dependent helicase ComFA Machinery gene
  SOZ35_RS18555 (SOZ35_18555) - 3655585..3656427 (-) 843 WP_003326716.1 DegV family protein -
  SOZ35_RS18560 (SOZ35_18560) degU 3656534..3657223 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  SOZ35_RS18565 (SOZ35_18565) degS 3657300..3658463 (-) 1164 WP_003326714.1 two-component sensor histidine kinase DegS Regulator
  SOZ35_RS18570 (SOZ35_18570) - 3658681..3659334 (+) 654 WP_003326713.1 YigZ family protein -
  SOZ35_RS18575 (SOZ35_18575) - 3659334..3660590 (+) 1257 WP_106360079.1 LCP family protein -
  SOZ35_RS18580 (SOZ35_18580) - 3660680..3661756 (-) 1077 WP_003326711.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=970517 SOZ35_RS18560 WP_003219701.1 3656534..3657223(-) (degU) [Bacillus atrophaeus strain TL401]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=970517 SOZ35_RS18560 WP_003219701.1 3656534..3657223(-) (degU) [Bacillus atrophaeus strain TL401]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAATTATTTCGTGAAGGTGTTAAGCGAATATTAGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCAGCTCGTATTGTTGAGCACTATCATCCTGACGTAGTCA
TTATGGATATTAATATGCCGAATGTAAATGGTGTGGAAGCTACTAAGCAGCTTGTAGAGCTGTATCCCGAATCAAAAGTA
ATTATCTTGTCTATTCATGATGATGAAAATTATGTGACACATGCCTTAAAAACAGGCGCAAGAGGTTATCTGCTGAAAGA
AATGGACGCTGATACTTTGATCGAAGCAGTTAAAGTGGTGGCGGAAGGCGGTTCATATCTCCATCCGAAGGTCACTCACA
ATCTTGTAAACGAGTTTCGACGTCTTGCAACAAGCGGAGTTTCTGCCCATCCTCAGCATGAGGTATATCCGGAAATTCGG
AGACCGTTACATATTCTAACCAGGCGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGTAAAAGCAACCGCGGTATAGG
CGAATCACTATTTATCAGTGAAAAAACAGTCAAAAATCATGTCAGCAATATTTTGCAAAAAATGAACGTAAACGATCGGA
CGCAAGCAGTTGTGGTCGCGATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment