Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX   Type   Regulator
Locus tag   SOZ35_RS16620 Genome accession   NZ_CP150480
Coordinates   3274530..3274697 (-) Length   55 a.a.
NCBI ID   WP_106033957.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain TL401     
Function   binding to ComP; trigger autophosphorylation of ComP (predicted from homology)   
Competence regulation

Genomic Context

Location: 3269530..3279697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOZ35_RS16590 (SOZ35_16590) - 3269933..3270409 (+) 477 WP_003327158.1 Na+/H+ antiporter subunit E -
  SOZ35_RS16595 (SOZ35_16595) - 3270409..3270693 (+) 285 WP_003327157.1 Na(+)/H(+) antiporter subunit F1 -
  SOZ35_RS16600 (SOZ35_16600) mnhG 3270677..3271051 (+) 375 WP_003327156.1 monovalent cation/H(+) antiporter subunit G -
  SOZ35_RS16605 (SOZ35_16605) - 3271090..3271470 (-) 381 WP_340639773.1 hotdog fold thioesterase -
  SOZ35_RS16610 (SOZ35_16610) comA 3271488..3272129 (-) 642 WP_340639774.1 response regulator transcription factor Regulator
  SOZ35_RS16615 (SOZ35_16615) comP 3272210..3274516 (-) 2307 WP_106033958.1 two-component system sensor histidine kinase ComP Regulator
  SOZ35_RS16620 (SOZ35_16620) comX 3274530..3274697 (-) 168 WP_106033957.1 competence pheromone ComX Regulator
  SOZ35_RS16625 (SOZ35_16625) comQ 3274681..3275583 (-) 903 WP_106034023.1 polyprenyl synthetase family protein Regulator
  SOZ35_RS16630 (SOZ35_16630) degQ 3275768..3275911 (-) 144 WP_003327149.1 degradation enzyme regulation protein DegQ Regulator
  SOZ35_RS16635 (SOZ35_16635) - 3276371..3276730 (+) 360 WP_327851480.1 hypothetical protein -
  SOZ35_RS16640 (SOZ35_16640) - 3276749..3277981 (-) 1233 WP_003327147.1 EAL and HDOD domain-containing protein -
  SOZ35_RS16645 (SOZ35_16645) - 3278119..3279585 (-) 1467 WP_088117879.1 nicotinate phosphoribosyltransferase -

Sequence

Protein


Download         Length: 55 a.a.        Molecular weight: 6568.44 Da        Isoelectric Point: 4.6094

>NTDB_id=970510 SOZ35_RS16620 WP_106033957.1 3274530..3274697(-) (comX) [Bacillus atrophaeus strain TL401]
MQDLINYFLNYPEVLKKLKNKEACLIGFDLDETQTILKAYDDYHLSAQRTREWDG

Nucleotide


Download         Length: 168 bp        

>NTDB_id=970510 SOZ35_RS16620 WP_106033957.1 3274530..3274697(-) (comX) [Bacillus atrophaeus strain TL401]
ATGCAAGATCTAATTAATTACTTTTTAAATTATCCTGAAGTATTAAAAAAATTGAAAAACAAAGAAGCTTGCCTTATAGG
TTTTGATTTAGACGAAACTCAAACAATACTTAAAGCTTACGATGATTATCATCTGTCTGCTCAAAGAACTCGTGAATGGG
ACGGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX Bacillus subtilis subsp. subtilis str. 168

77.358

96.364

0.745

Multiple sequence alignment