Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   SOZ35_RS16610 Genome accession   NZ_CP150480
Coordinates   3271488..3272129 (-) Length   213 a.a.
NCBI ID   WP_340639774.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain TL401     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3266488..3277129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOZ35_RS16575 (SOZ35_16575) - 3267681..3268112 (+) 432 WP_003327161.1 Na(+)/H(+) antiporter subunit B -
  SOZ35_RS16580 (SOZ35_16580) - 3268112..3268453 (+) 342 WP_003327160.1 Na(+)/H(+) antiporter subunit C -
  SOZ35_RS16585 (SOZ35_16585) - 3268446..3269927 (+) 1482 WP_340639772.1 Na+/H+ antiporter subunit D -
  SOZ35_RS16590 (SOZ35_16590) - 3269933..3270409 (+) 477 WP_003327158.1 Na+/H+ antiporter subunit E -
  SOZ35_RS16595 (SOZ35_16595) - 3270409..3270693 (+) 285 WP_003327157.1 Na(+)/H(+) antiporter subunit F1 -
  SOZ35_RS16600 (SOZ35_16600) mnhG 3270677..3271051 (+) 375 WP_003327156.1 monovalent cation/H(+) antiporter subunit G -
  SOZ35_RS16605 (SOZ35_16605) - 3271090..3271470 (-) 381 WP_340639773.1 hotdog fold thioesterase -
  SOZ35_RS16610 (SOZ35_16610) comA 3271488..3272129 (-) 642 WP_340639774.1 response regulator transcription factor Regulator
  SOZ35_RS16615 (SOZ35_16615) comP 3272210..3274516 (-) 2307 WP_106033958.1 two-component system sensor histidine kinase ComP Regulator
  SOZ35_RS16620 (SOZ35_16620) comX 3274530..3274697 (-) 168 WP_106033957.1 competence pheromone ComX Regulator
  SOZ35_RS16625 (SOZ35_16625) comQ 3274681..3275583 (-) 903 WP_106034023.1 polyprenyl synthetase family protein Regulator
  SOZ35_RS16630 (SOZ35_16630) degQ 3275768..3275911 (-) 144 WP_003327149.1 degradation enzyme regulation protein DegQ Regulator
  SOZ35_RS16635 (SOZ35_16635) - 3276371..3276730 (+) 360 WP_327851480.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23974.33 Da        Isoelectric Point: 4.6839

>NTDB_id=970508 SOZ35_RS16610 WP_340639774.1 3271488..3272129(-) (comA) [Bacillus atrophaeus strain TL401]
MKKILVIDDHPAVMEGTKTILETDANLSVDCLSPDASEHFVHNHDFAAYDLILMDLNLGEINGMELSKKILKENPLCKII
VYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNDEILVDFSYFKQLVTHQKTKPAAASQNDQDVLTPRECLI
LQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSWTEAVLIAKSDGVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=970508 SOZ35_RS16610 WP_340639774.1 3271488..3272129(-) (comA) [Bacillus atrophaeus strain TL401]
ATGAAAAAGATACTTGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTCTGGAAACAGATGCAAATCT
TTCTGTCGATTGTCTCAGTCCTGATGCCAGTGAACATTTTGTTCATAATCATGATTTTGCGGCTTATGATCTCATCTTAA
TGGATTTAAATCTAGGTGAAATCAACGGGATGGAGCTTTCTAAAAAGATTTTAAAAGAGAATCCTCTCTGCAAAATCATT
GTTTATACCGGCTATGAAGTGGAGGATTATTTTGAGGAGGCCATTCGTGCAGGGCTGCACGGCGCGATCAGCAAGACCGA
ATCAAAAGAAAAGATTACGCAATACATATATCATGTGCTCAATGATGAAATTTTAGTTGATTTTTCTTATTTTAAACAGT
TGGTCACTCATCAAAAAACAAAACCTGCTGCCGCTTCGCAAAATGATCAAGATGTTCTGACGCCAAGAGAATGCCTCATT
CTTCAAGAGGTGGAAAAGGGATTTACCAATCAGGAAATAGCTGACGCGCTCCATCTGAGCAAGCGTTCGATTGAATACAG
CCTGACGTCCATTTTCAACAAATTGAATGTCGGTTCCTGGACGGAAGCGGTACTGATTGCAAAATCGGATGGCGTACTTT
AA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(151-207)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

89.252

100

0.897

Multiple sequence alignment