Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   VUK78_RS12520 Genome accession   NZ_CP150467
Coordinates   423091..423630 (+) Length   179 a.a.
NCBI ID   WP_005444320.1    Uniprot ID   -
Organism   Vibrio harveyi strain NH-LM1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 418091..428630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VUK78_RS12505 (VUK78_12505) uvrA 418158..420980 (-) 2823 WP_340700165.1 excinuclease ABC subunit UvrA -
  VUK78_RS12510 (VUK78_12510) galU 421118..421990 (-) 873 WP_340700166.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  VUK78_RS12515 (VUK78_12515) qstR 422152..422796 (-) 645 WP_009698824.1 LuxR C-terminal-related transcriptional regulator Regulator
  VUK78_RS12520 (VUK78_12520) ssb 423091..423630 (+) 540 WP_005444320.1 single-stranded DNA-binding protein Machinery gene
  VUK78_RS12525 (VUK78_12525) csrD 423882..425891 (+) 2010 WP_009698823.1 RNase E specificity factor CsrD -
  VUK78_RS12530 (VUK78_12530) - 425903..427351 (+) 1449 WP_340700167.1 MSHA biogenesis protein MshI -
  VUK78_RS12535 (VUK78_12535) gspM 427348..427998 (+) 651 WP_005444327.1 type II secretion system protein GspM -
  VUK78_RS12540 (VUK78_12540) - 427991..428320 (+) 330 WP_009698822.1 hypothetical protein -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19933.98 Da        Isoelectric Point: 4.9269

>NTDB_id=970408 VUK78_RS12520 WP_005444320.1 423091..423630(+) (ssb) [Vibrio harveyi strain NH-LM1]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPMGGGQQQQQQGGWGQPQQPAQQQQYNAPQQQQQQAPQ
QQQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=970408 VUK78_RS12520 WP_005444320.1 423091..423630(+) (ssb) [Vibrio harveyi strain NH-LM1]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCAGTAGCAAACATCACGATTGCAACTTCTGAGTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACAG
AATGGCACCGTGTTGTGTTATTCGGCAAGCTTGCTGAAGTAGCGGGTGAGTACCTACGTAAAGGTTCTCAAGTTTACGTT
GAAGGTCAACTTCAAACTCGTAAATGGCAAGACCAAAGTGGTCAAGATCGCTACTCAACAGAAGTGGTTGTTCAAGGCTT
CAATGGCGTAATGCAAATGCTTGGCGGTCGTGCTCAAGGTGGCGCTCCAATGGGTGGCGGTCAACAACAGCAGCAACAAG
GCGGCTGGGGTCAACCTCAACAACCGGCTCAACAGCAGCAATACAACGCTCCTCAGCAACAGCAACAACAGGCTCCGCAG
CAACAACAGCCGCAATATAACGAGCCGCCAATGGATTTTGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

81.319

100

0.827
  ssb Glaesserella parasuis strain SC1401

56.452

100

0.587
  ssb Neisseria meningitidis MC58

46.629

99.441

0.464
  ssb Neisseria gonorrhoeae MS11

46.629

99.441

0.464

Multiple sequence alignment